Locus 5207

Sequence ID 2L_DroMel_CAF1
Location 14,721,199 – 14,721,311
Length 112
Max. P 0.991821
window8290 window8291

overview

Window 0

Location 14,721,199 – 14,721,311
Length 112
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 94.24
Mean single sequence MFE -18.57
Consensus MFE -16.40
Energy contribution -16.44
Covariance contribution 0.04
Combinations/Pair 1.04
Mean z-score -1.37
Structure conservation index 0.88
SVM decision value 0.69
SVM RNA-class probability 0.824655
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14721199 112 + 22407834
UAUAAAAAGUUUUUCCCUUCUACGGAUUUAUUUUUAUGCCUUCUGCCUUAGCAUAUGCUUGUUUAUAGCCUGUGCUGCUUAUGCCACAGUGCUUCCUUCGCUUUUCUUUGCU
.(((((((.....(((.......)))....)))))))((...(((....((((((.(((.......))).))))))((....))..))).)).......((........)). ( -19.30)
>DroSec_CAF1 77998 110 + 1
UAUAAAAAGUU-UUCCCUUCUACGGAUUUAUUUUUAUGCCUUCUGCCUUAGCAUAUGCUUGUUUAUAGCCUGUGCUGCUUAUGCCACAGUGCUUCCUUUGCUUCU-UCUGCU
((((((((...-.(((.......)))....))))))))...........((((...((........((((((((..((....))))))).)))......))....-..)))) ( -19.94)
>DroSim_CAF1 78117 111 + 1
UAUAAAAAGUUUUUCCCUUCUACGGAUUUAUUUUUAUGCCUUCUGCCUUAGCAUAUGCUUGUUUAUAGCCUGUGCUGCUUAUGCCACAGUGCUUCCUUCGCUUCU-UCUGCU
.(((((((.....(((.......)))....)))))))((...(((....((((((.(((.......))).))))))((....))..))).)).......((....-...)). ( -19.00)
>DroEre_CAF1 81050 110 + 1
UAUAAAAAGUU-UUCCCUUCUUCGGAUUUAUUUUUAUGCCUUCUGCCUUAGCAUAUGCUUGUUUAUAGCCUGUGCUGCUUAUGCCACCGAGCAUCCUUCGCCUUU-UCCGCU
((((((((...-.(((.......)))....))))))))......((...((((((.(((.......))).))))))((((........)))).............-...)). ( -19.80)
>DroYak_CAF1 77190 110 + 1
UAUAAAAAGUU-UUCCCUUCUUCGGAUUUAUUUUUAUGCCUUCUGCCUUAGCAUAUGCUUGUUUAUAGCCUCUGCUGCUUAUGCCACCGUGCAUCCUUCGCCUCU-UCUGUU
((((((((...-.(((.......)))....))))))))......((..(((((...(((.......)))...)))))...((((......)))).....))....-...... ( -14.80)
>consensus
UAUAAAAAGUU_UUCCCUUCUACGGAUUUAUUUUUAUGCCUUCUGCCUUAGCAUAUGCUUGUUUAUAGCCUGUGCUGCUUAUGCCACAGUGCUUCCUUCGCUUCU_UCUGCU
((((((((.....(((.......)))....))))))))......(((..((((((.(((.......))).))))))((....))....).)).......((........)). (-16.40 = -16.44 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 1

Location 14,721,199 – 14,721,311
Length 112
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 94.24
Mean single sequence MFE -24.86
Consensus MFE -20.04
Energy contribution -21.04
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -2.79
Structure conservation index 0.81
SVM decision value 2.29
SVM RNA-class probability 0.991821
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14721199 112 - 22407834
AGCAAAGAAAAGCGAAGGAAGCACUGUGGCAUAAGCAGCACAGGCUAUAAACAAGCAUAUGCUAAGGCAGAAGGCAUAAAAAUAAAUCCGUAGAAGGGAAAAACUUUUUAUA
.((........))...((((((.(((((((....))..))))))))........((...(((....)))....))...........)))((((((((......)))))))). ( -26.80)
>DroSec_CAF1 77998 110 - 1
AGCAGA-AGAAGCAAAGGAAGCACUGUGGCAUAAGCAGCACAGGCUAUAAACAAGCAUAUGCUAAGGCAGAAGGCAUAAAAAUAAAUCCGUAGAAGGGAA-AACUUUUUAUA
.((...-....))...((((((.(((((((....))..))))))))........((...(((....)))....))...........)))((((((((...-..)))))))). ( -26.30)
>DroSim_CAF1 78117 111 - 1
AGCAGA-AGAAGCGAAGGAAGCACUGUGGCAUAAGCAGCACAGGCUAUAAACAAGCAUAUGCUAAGGCAGAAGGCAUAAAAAUAAAUCCGUAGAAGGGAAAAACUUUUUAUA
.((...-....))...((((((.(((((((....))..))))))))........((...(((....)))....))...........)))((((((((......)))))))). ( -26.50)
>DroEre_CAF1 81050 110 - 1
AGCGGA-AAAGGCGAAGGAUGCUCGGUGGCAUAAGCAGCACAGGCUAUAAACAAGCAUAUGCUAAGGCAGAAGGCAUAAAAAUAAAUCCGAAGAAGGGAA-AACUUUUUAUA
..((((-.....(....).((((...(((((((.(((((....)))........)).))))))).)))).................))))((((((....-..))))))... ( -23.20)
>DroYak_CAF1 77190 110 - 1
AACAGA-AGAGGCGAAGGAUGCACGGUGGCAUAAGCAGCAGAGGCUAUAAACAAGCAUAUGCUAAGGCAGAAGGCAUAAAAAUAAAUCCGAAGAAGGGAA-AACUUUUUAUA
....((-((((((......(((....(((((((.(((((....)))........)).)))))))..)))....))...........(((......)))..-..))))))... ( -21.50)
>consensus
AGCAGA_AGAAGCGAAGGAAGCACUGUGGCAUAAGCAGCACAGGCUAUAAACAAGCAUAUGCUAAGGCAGAAGGCAUAAAAAUAAAUCCGUAGAAGGGAA_AACUUUUUAUA
................(((.((.(((((((....))..))))))).........((...(((....)))....))...........)))((((((((......)))))))). (-20.04 = -21.04 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:40 2006