| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,719,397 – 14,719,496 |
| Length | 99 |
| Max. P | 0.946698 |
| Location | 14,719,397 – 14,719,496 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 94.95 |
| Mean single sequence MFE | -33.03 |
| Consensus MFE | -28.95 |
| Energy contribution | -29.73 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.628932 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14719397 99 + 22407834 AGCCAGCGGUAGUGGAUGGACUUGGGUUUUGGACGUGGACCCGGAUCGUCCAACUACCCACUUCCACCUCCCACAUCCCAGAUCCCAGCUAACCAUUCG .......(((((((((((((..((((...((((.((((....((.....))......)))).))))...))))..)))...))))..))).)))..... ( -30.20) >DroSec_CAF1 76264 99 + 1 AGCCGGCGGGAGUGAAUGGACUUGGGUUUUGGACUUGGACCCGGAUCGUCCAACUACCCACUUCCAUCUCCCACAUCCCAGAGCCCAGCUAACCAUUCG (((.((((((((((.(((((..(((((.(((((((((....)))...))))))..)))))..)))))....))).))))...)))..)))......... ( -35.80) >DroSim_CAF1 76352 98 + 1 AGCCAGCGGGAGUGGAUGGACUUGGGU-UUGGACUUGGACCCGGAUCGUCCAACUACCCACUUCCAACUCCCACAUCCCAGAUCCCAGCUAACCAUUCG ....(((((((((((.((((..(((((-(((((((((....)))...))))))..)))))..))))....)))).)))).(....).)))......... ( -33.10) >consensus AGCCAGCGGGAGUGGAUGGACUUGGGUUUUGGACUUGGACCCGGAUCGUCCAACUACCCACUUCCAACUCCCACAUCCCAGAUCCCAGCUAACCAUUCG ....(((((((((((.((((..(((((.(((((((((....)))...))))))..)))))..))))....)))).)))).(....).)))......... (-28.95 = -29.73 + 0.78)
| Location | 14,719,397 – 14,719,496 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 94.95 |
| Mean single sequence MFE | -41.00 |
| Consensus MFE | -38.94 |
| Energy contribution | -38.83 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.95 |
| SVM decision value | 1.36 |
| SVM RNA-class probability | 0.946698 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14719397 99 - 22407834 CGAAUGGUUAGCUGGGAUCUGGGAUGUGGGAGGUGGAAGUGGGUAGUUGGACGAUCCGGGUCCACGUCCAAAACCCAAGUCCAUCCACUACCGCUGGCU .....(((((((....(((...)))((((..((((((..(((((..(((((((...........))))))).)))))..))))))..)))).))))))) ( -39.40) >DroSec_CAF1 76264 99 - 1 CGAAUGGUUAGCUGGGCUCUGGGAUGUGGGAGAUGGAAGUGGGUAGUUGGACGAUCCGGGUCCAAGUCCAAAACCCAAGUCCAUUCACUCCCGCCGGCU .........((((((....(((((.(((...((((((..(((((..(((((((((....)))...)))))).)))))..)))))))))))))))))))) ( -42.50) >DroSim_CAF1 76352 98 - 1 CGAAUGGUUAGCUGGGAUCUGGGAUGUGGGAGUUGGAAGUGGGUAGUUGGACGAUCCGGGUCCAAGUCCAA-ACCCAAGUCCAUCCACUCCCGCUGGCU .........(((..(....(((((.(((((...((((..(((((..(((((((((....)))...))))))-)))))..)))))))))))))))..))) ( -41.10) >consensus CGAAUGGUUAGCUGGGAUCUGGGAUGUGGGAGAUGGAAGUGGGUAGUUGGACGAUCCGGGUCCAAGUCCAAAACCCAAGUCCAUCCACUCCCGCUGGCU .........((((((....(((((.(((((...((((..(((((..(((((((((....)))...)))))).)))))..)))))))))))))))))))) (-38.94 = -38.83 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:38 2006