Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,714,525 – 14,714,632 |
Length | 107 |
Max. P | 0.740454 |
Location | 14,714,525 – 14,714,632 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.61 |
Mean single sequence MFE | -32.02 |
Consensus MFE | -16.42 |
Energy contribution | -16.87 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.07 |
Mean z-score | -3.16 |
Structure conservation index | 0.51 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.740454 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14714525 107 - 22407834 GAGUUUU---GCGAUUUUU-GGCUUAA-AACUUUGGCCAUAACAAUUGGCCAUGGCCAUCAUCGCGAUUUUGACACAAAAC---ACGAAGUCAUUGCUGAAU-----UCACAUCCAAAUA ((((((.---(((((...(-((((...-.....((((((.......)))))).)))))..)))))(((((((.........---.)))))))......))))-----))........... ( -31.00) >DroPse_CAF1 98833 119 - 1 GAGUUUUCUGGCGAUUUUUCGGCUUAAAAACUUUUCCCAUAACAAUUGGCCAUGGCCAUCGUCGCGACUUUGCGACAAACCUAAACAUUGCCAUCUCUUAACAGAGGGGAGAGCGAAAU- ..(((((((((((((.(((.((........................((((....))))..((((((....))))))...)).))).)))))).(((((....)))))))))))).....- ( -36.30) >DroSec_CAF1 71581 107 - 1 GAGUUUU---GCGAUUUUU-GGCUUAA-AACUUUGGCCAUAACAAUUGGCCAUGGCCAUCAUCGCGAUUUUGACACAAAAC---ACGAAGCCAUUACUGAUU-----UCACAUCCAAAUA ..(((((---(((((...(-((((...-.....((((((.......)))))).)))))..)))))))....))).......---..(((..((....))..)-----))........... ( -26.40) >DroEre_CAF1 71141 104 - 1 GAGUUUU---GCGAUUUUU-GGCUUAA-AACUUUGGCCAUAACAAUUGGCCAUGGCCAUCAUCGCGAUUUUGACACAAAAC---ACAAAGCCAUUGCUGAAU-----UCACAUCCAA--- (((((((---(((((...(-((((...-.....((((((.......)))))).)))))..))))))...............---....(((....)))))))-----))........--- ( -27.80) >DroYak_CAF1 70616 107 - 1 GAGUUUU---GCGAUUUUU-GGCUUAC-AACUUUGGCCAUAACAAUUGGCCAUGGCCAUCAUCGCGAUUUUGACACAAAAC---GCGAAGCCAUUGCUGAAU-----UCACAUCCAAAUA ((((((.---((((....(-((((...-..((.((((((.......)))))).))......(((((.(((((...))))))---))))))))))))).))))-----))........... ( -34.30) >DroPer_CAF1 99008 119 - 1 GAGUUUUCUGGCGAUUUUUCGGCUUAAAAACUUUUCCCAUAACAAUUGGCCAUGGCCAUCGUCGCGACUUUGCGACAAACCUAAACAUUGCCAUCUCUUAACAGAGGGGAGAGCGAAAU- ..(((((((((((((.(((.((........................((((....))))..((((((....))))))...)).))).)))))).(((((....)))))))))))).....- ( -36.30) >consensus GAGUUUU___GCGAUUUUU_GGCUUAA_AACUUUGGCCAUAACAAUUGGCCAUGGCCAUCAUCGCGAUUUUGACACAAAAC___ACAAAGCCAUUGCUGAAU_____UCACAUCCAAAU_ ..........(((((.....((((.........((((((.......)))))).))))...)))))....................................................... (-16.42 = -16.87 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:28 2006