Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,710,182 – 14,710,288 |
Length | 106 |
Max. P | 0.614899 |
Location | 14,710,182 – 14,710,288 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 76.56 |
Mean single sequence MFE | -23.45 |
Consensus MFE | -12.48 |
Energy contribution | -12.44 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.35 |
Mean z-score | -1.78 |
Structure conservation index | 0.53 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.614899 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14710182 106 - 22407834 UAGAAAAGUUUCCCACUGCACUCGCAUCGCUUCG--AAGGGCGGCGAAGUUUUCUUUAUUGCCUUUUGGCCCG--CUUUUUGCCCUCACCGCGUUUUUUU--UUUU--AUACUA ((((((((........(((....))).(((.(((--((((((((..(((....)))..)))))))))))...(--(.....)).......)))....)))--))))--)..... ( -24.00) >DroSec_CAF1 66944 108 - 1 UAGAAAAGUUUCCCACUGCACUCGCAUCGCUCCG--AAGGGCGGCGAAGUUUUCUUUACUGCCUUUUCGUCCG--CUUUUUGCCCUCACCGCGUUUUUUUUUUUUU--AAACUA ((((((((........(((....))).(((..((--((((((((..(((....)))..))))).)))))...(--(.....)).......)))......)))))))--)..... ( -23.90) >DroSim_CAF1 67168 108 - 1 UAGAAAAGUUUCCCACUGCACUCGCAUCGCUUCG--AAGGGCGGCGAAGUUUUCUUUACUGCCUUUUGGUCCG--CUUUUUGCCCUCACCGCGUUUUUUUUUUUUU--AAACUA ((((((((........(((....))).(((.(((--((((((((..(((....)))..)))))))))))...(--(.....)).......)))......)))))))--)..... ( -26.50) >DroYak_CAF1 66168 106 - 1 UAGAAAAGUUUCCCACUGCACUCGCAUCGCUUCUC-UGGGGCGGCGAAGUUUUCUUUACUGCCUUUUGGCCCAUUUUUUU-UGCCUUACCAUGUUUU---U-UUUU--AUACUA ((((((((........(((....))).........-((((((((..(((....)))..)))))....(((..........-.)))...)))....))---)-))))--)..... ( -20.00) >DroAna_CAF1 61415 106 - 1 UAGAAACUUUUUCC-CAGCAUUCGCCUCGCUUCUUUUUGGCCAGAGAAGUUUGCUUCGUCUACCGUUGGC------UUCU-UCCCUCUCUGCCAUCUUUAUUUUUCGAAUGCCG ..............-..(((((((.............((((.(((((((...(((.((.....))..)))------..))-....)))))))))...........))))))).. ( -22.85) >consensus UAGAAAAGUUUCCCACUGCACUCGCAUCGCUUCG__AAGGGCGGCGAAGUUUUCUUUACUGCCUUUUGGCCCG__CUUUUUGCCCUCACCGCGUUUUUUUUUUUUU__AUACUA .................((....))...(((.....((((((((.((((....)))).)))))))).)))............................................ (-12.48 = -12.44 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:22 2006