| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,709,110 – 14,709,224 |
| Length | 114 |
| Max. P | 0.760557 |
| Location | 14,709,110 – 14,709,224 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.75 |
| Mean single sequence MFE | -33.53 |
| Consensus MFE | -16.59 |
| Energy contribution | -17.20 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.49 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.760557 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14709110 114 - 22407834 CCGCUCGUAAUUAGAAGCAAAUGCAAAUUUACACUUUGAGUGU--GUCG-GUGAUGACGGAAGUCAUUGGUAAAACCUG---AAGCUGUGGGCGGGCAGAAAGUUGGCUCUGCCGUUGGA .((((((.........((....)).....(((((.....))))--).((-((((((((....))))))((.....))..---..))))))))))((((((........))))))...... ( -35.50) >DroPse_CAF1 91800 104 - 1 UCUCUUGUAAUUAGAAGCAAAUGCAAAUUUACACGUCGAGUGUAUGUCGGGGGAUGACGGAAGUCAUUGGCAAACGCCG---AUUCCCAGGGCUAGCAG-------------CCCCUACA .....((((....((.((....)).....(((((.....)))))..))((((((((((....))))))(((....))).---..)))).((((.....)-------------))).)))) ( -33.80) >DroEre_CAF1 65213 99 - 1 CCGCUCGUAAUUAGAAGCAAAUGCAAAUUUACACUUUGAGUGU--GUCG-GCGAUGACGGAAGUCAUUGGUAAAACCUG---AAGCUGUGGGCGAGCAGAAAGUU--------------- ..((((((........((....))....(((((.(((.((.((--...(-.(((((((....))))))).)...)))).---))).)))))))))))........--------------- ( -31.40) >DroYak_CAF1 64989 114 - 1 CCGCUCGUAAUUAGAAGCAAAUGCAAAUUUACACUUUGAGUGU--GUCG-GUGAUGACGGAAGUCAUUGGUAAAACCAG---AAGCUGUGGGCGGGCUGAAAGUUCGCUCUGCCGCUGGA (((.............((....)).....(((((.....))))--).))-).((((((....)))))).......((((---..((...((((((((.....)))))))).))..)))). ( -37.20) >DroAna_CAF1 60499 104 - 1 ---CUCGUAAUUAGAAGCAAAUGCAAAUUUACACGUCGAGUGU--GCCG-GUGAUGACGGAAGUCAUUGGUAAAAGCCGAAGAAGCUGUGAGUGGGCGGAAAGUUGAAUC---------- ---..........((..(((.(((..((((((((.(((.((.(--(((.-..((((((....))))))))))...)))))....).)))))))..))).....)))..))---------- ( -28.40) >DroPer_CAF1 90863 104 - 1 UCCCUUGUAAUUAGAAGCAAAUGCAAAUUUACACGUCGAGUGUAUGUCGGGGGAUGACGGAAGUCAUUGGCAAACGCCG---AUUCCCAGGGCUAGCAG-------------CCCCUACA (((((((.........((....)).....(((((.....)))))...)))))))((((....))))(((((....))))---)......((((.....)-------------)))..... ( -34.90) >consensus CCGCUCGUAAUUAGAAGCAAAUGCAAAUUUACACGUCGAGUGU__GUCG_GUGAUGACGGAAGUCAUUGGUAAAACCCG___AAGCUGUGGGCGAGCAGAAAGUU_______CC_CU__A ...(((((...(((..((....))......((((.....)))).........((((((....)))))).................)))...)))))........................ (-16.59 = -17.20 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:21 2006