Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,695,245 – 14,695,351 |
Length | 106 |
Max. P | 0.692340 |
Location | 14,695,245 – 14,695,351 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 80.60 |
Mean single sequence MFE | -17.63 |
Consensus MFE | -9.66 |
Energy contribution | -9.03 |
Covariance contribution | -0.64 |
Combinations/Pair | 1.27 |
Mean z-score | -2.19 |
Structure conservation index | 0.55 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.692340 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14695245 106 + 22407834 AUGAAUCCCACAAACGUGGGUUUCCUACCAGCACCAAUUUUGUGCACCUGCUGACCAG-----ACAUCGAAUAAAUACAGCAAAAACACAAACACA--AUUAAAAAUAAGAAU ..(((.(((((....))))).)))..............((((((....(((((.....-----..............)))))....))))))....--............... ( -18.91) >DroSec_CAF1 51383 105 + 1 AUGAAUC-CACAAACGUGGGUUUCCAACCAGCACCAAUUUUGUGCACCUGCUGACCAG-----ACACCGAAUAAAUACAGCAAAAACACAAACACA--AUUAAAAAUAAGAAA ..(((((-(((....))))))))...............((((((....(((((.....-----..............)))))....))))))....--............... ( -17.41) >DroSim_CAF1 51646 105 + 1 AUAAAUC-CACAAACGUGGGUUUCCAACCAGCACCAAUUUUGUGCACCUGCUGACCAG-----ACAUCGAAUAAAUACAGCAAAAACACAAACACA--AUUAAAAAUAAAAAA ..(((((-(((....))))))))...............((((((....(((((.....-----..............)))))....))))))....--............... ( -17.01) >DroEre_CAF1 51095 94 + 1 AUGAAUC-CGCAAACGUGGGUUU-----CAGCACCAAUUUUGUGCACCUGCUGACCAG-----ACAUCAAAUAAAUAAAGCAAA------AACACA--AUUAAAAACCAGAGA .((((((-(((....))))).))-----))((((.......))))...((((......-----...............))))..------......--............... ( -14.80) >DroYak_CAF1 49917 104 + 1 AUGAAUG-CGCAAACGUGGGUUUCCUACCAGCACCAAUUUUGUGCACCUGCUGACCAG-----ACAUCA-AUAAAUAAAACAAAAACCAAAACACA--AUUAAAAACAACAGA .(((.((-((((((..((((((.......))).)))..)))))))).(((.....)))-----...)))-..........................--............... ( -15.40) >DroAna_CAF1 48775 104 + 1 AUGAAUA-CAUC-AUGUGGGCUU--UGCUAGCACCAUUUUUGUGCACCUGCUGGCCGGCGGACACAACCAAUAAAUGAAGCUAAAACACACACAUAGGAGUAACAAAA----- .....((-(..(-(((((.....--...((((..((((((((((...(((((....))))).))))).....)))))..)))).......))))).)..)))......----- ( -22.26) >consensus AUGAAUC_CACAAACGUGGGUUUCCUACCAGCACCAAUUUUGUGCACCUGCUGACCAG_____ACAUCGAAUAAAUAAAGCAAAAACACAAACACA__AUUAAAAAUAAGAAA ........(((....)))((((........((((.......)))).......))))......................................................... ( -9.66 = -9.03 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:17 2006