Locus 5192

Sequence ID 2L_DroMel_CAF1
Location 14,692,494 – 14,692,604
Length 110
Max. P 0.944612
window8263

overview

Window 3

Location 14,692,494 – 14,692,604
Length 110
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 89.33
Mean single sequence MFE -33.47
Consensus MFE -30.04
Energy contribution -30.57
Covariance contribution 0.53
Combinations/Pair 1.03
Mean z-score -1.91
Structure conservation index 0.90
SVM decision value 1.35
SVM RNA-class probability 0.944612
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14692494 110 + 22407834
CUGGCAACCAAAAA----AA-AAAAACAUGCAACAUGGGGCAGGAGCAACAACAAGUGCAUCCGAUCCCGCCUUCGGGGUGUGUGACCAAAAACUUGGAUCACGCUUCUUGUCGG
(((((((.......----..-........((.....((((..((((((........))).)))..)))).((....))))((((((((((....)))).))))))...))))))) ( -34.60)
>DroSec_CAF1 48601 109 + 1
CUGGCAACCAAAAA-----A-AAAAAAAUGCAACAUGGGGCAGGAGCAACAACAAGUGCAUCCGAUCCCGCCUUCGGGGUGUGUGACCAAAAACUUGGAUCACGCUUCUUGUCGG
(((((((.......-----.-........((.....((((..((((((........))).)))..)))).((....))))((((((((((....)))).))))))...))))))) ( -34.60)
>DroSim_CAF1 48837 114 + 1
CUGGCAACCAAAAACAAAAA-AAAAACAUGCAACAUGGGGCAGGAGCAACAACAAGUGCAUCCGAUCCCGCCUUCGGGGUGUGUGACCAAAAACUUGGAUCACGCUUCUUGUCGG
(((((((.............-........((.....((((..((((((........))).)))..)))).((....))))((((((((((....)))).))))))...))))))) ( -34.60)
>DroEre_CAF1 48269 106 + 1
CUGGCAACCAGUAAC---------AACAUGCAACAUGGGGCAGGAGCAACAACAAGUGCAACCGAUCCCGCCUUCGGGGUGUGUGACCAAAAACUUGGAUCACGCUUCUUGUCGG
((((...))))....---------..((((...)))).((((((((((........))).....((((((....))))))((((((((((....)))).)))))).))))))).. ( -33.10)
>DroYak_CAF1 46862 115 + 1
CUGGCAACCAAAAAAAAAAAGGAAAACAUGCAACAUGGGGCAGGAGCAACAACAAGUGCAUCCGAUCCCGCCUUCGGGGUGUGUGACCAACAACUUGGAUCACGCUUCUUGUCGG
(((((((((...........)).......((.((((((((..((((((........))).)))..)))).((....))))))((((((((....)))).))))))...))))))) ( -34.90)
>DroAna_CAF1 46324 96 + 1
CCAGCA-------------------ACAUGCAACAUGGGGCAGCAGCAACAACAAGUGCAACCGAGCCCGCCUUCGGGGUGUGUGACCAAAAACAUGGAUCACGCUUCUUGUCGG
...((.-------------------.((((...))))..))....(((........)))..((((.((((....))))..(((((((((......))).))))))......)))) ( -29.00)
>consensus
CUGGCAACCAAAAA_____A_AAAAACAUGCAACAUGGGGCAGGAGCAACAACAAGUGCAUCCGAUCCCGCCUUCGGGGUGUGUGACCAAAAACUUGGAUCACGCUUCUUGUCGG
(((((((.....................((((...((..((....))..)).....))))....((((((....))))))((((((((((....)))).))))))...))))))) (-30.04 = -30.57 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:15 2006