Locus 5191

Sequence ID 2L_DroMel_CAF1
Location 14,691,976 – 14,692,080
Length 104
Max. P 0.709027
window8262

overview

Window 2

Location 14,691,976 – 14,692,080
Length 104
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 77.57
Mean single sequence MFE -19.68
Consensus MFE -13.10
Energy contribution -12.93
Covariance contribution -0.17
Combinations/Pair 1.06
Mean z-score -1.34
Structure conservation index 0.67
SVM decision value 0.37
SVM RNA-class probability 0.709027
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14691976 104 - 22407834
---GG-GGACAACUCAACUCGUGACUCGAUUGACAUUUGAAUGAGAGUGGAAAAUGUGCAAAACGAGUGGCGUUCGGUGGCUACCAAAAAUAAAACCAAAAAAA-------AAAA
---((-((...(((.....(((.(((((.(((((((((..((....))...)))))).)))..))))).)))...)))..)).))...................-------.... ( -22.60)
>DroPse_CAF1 60190 86 - 1
CGCGGUAGAC-ACUCAGCUCGUGACUCGAUUGACAUUUGAAUGAGAGUGGAAAAUGUGCAAAACGAGCG-------------ACCAAACAGAAAA--AAAA-----------G--
...(((.(..-...).((((((.......(((((((((..((....))...)))))).))).)))))).-------------)))..........--....-----------.-- ( -17.10)
>DroEre_CAF1 47788 107 - 1
---GG-GGACAACUCAACUCGUGACUCGAUUGACAUUUGAAUGAGAGUGGAAAAUGUGCAAAACGAGUGGCG----GUGGCUACCAAAAAUAAAACGAACAAAAACAAAAAAAUA
---((-(.....))).((.(((.(((((.(((((((((..((....))...)))))).)))..))))).)))----))..................................... ( -21.90)
>DroYak_CAF1 46338 96 - 1
---GG-GGACAACUCAACUCGUGACUCGAUUGACAUUUGAAUGAGAGUGGAAAAUGUGCAAAACGAGUGGCG----GUGGCUACCAAAAAUAAAACCAAAA-----------GAA
---((-(.....))).((.(((.(((((.(((((((((..((....))...)))))).)))..))))).)))----)).......................-----------... ( -21.90)
>DroAna_CAF1 44467 85 - 1
---GG-GGAC-ACUCAACUCGUGACUCGAUUGACAUUUGAAUGAGAGUGGAAAAUGUGCAAAACGAGCGGC-------GGCUACCAAAAA------------------AUAAGAA
---((-(...-.)))...((((..((((.(((((((((..((....))...)))))).)))..))))..))-------))..........------------------....... ( -17.50)
>DroPer_CAF1 68175 86 - 1
CGCGGUAGAC-ACUCAGCUCGUGACUCGAUUGACAUUUGAAUGAGAGUGGAAAAUGUGCAAAACGAGCG-------------ACCAAACAGAAAA--AAAA-----------G--
...(((.(..-...).((((((.......(((((((((..((....))...)))))).))).)))))).-------------)))..........--....-----------.-- ( -17.10)
>consensus
___GG_GGAC_ACUCAACUCGUGACUCGAUUGACAUUUGAAUGAGAGUGGAAAAUGUGCAAAACGAGCGGC_______GGCUACCAAAAAUAAAA__AAAA___________GAA
................((((((.......(((((((((..((....))...)))))).))).))))))............................................... (-13.10 = -12.93 +  -0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:14 2006