Locus 5190

Sequence ID 2L_DroMel_CAF1
Location 14,691,280 – 14,691,381
Length 101
Max. P 0.760852
window8261

overview

Window 1

Location 14,691,280 – 14,691,381
Length 101
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 87.19
Mean single sequence MFE -21.42
Consensus MFE -14.74
Energy contribution -15.22
Covariance contribution 0.48
Combinations/Pair 1.11
Mean z-score -2.24
Structure conservation index 0.69
SVM decision value 0.50
SVM RNA-class probability 0.760852
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14691280 101 - 22407834
ACGUCGCUUCUUCAUUUCACCUUUAUUCUCACCGGCUCCUCCUCCUUAAUUCUUUGAGGGCAGCGCCAGACAUUAGUCUUUCCGUUGCGAGAUCCCGAACC
................................(((...(((..((((((....))))))((((((..((((....))))...)))))))))...))).... ( -23.90)
>DroSec_CAF1 47272 101 - 1
ACCUCGCUUCUUCAUUUCACCUUUAUUCUCAGCGGCUCCUCCUCCUUAAUUCUUUGAGGGCAGCGCCAGACAUUAGUCUUUCCUUUCCGAGAUCCCAAACC
..........................((((...(((..((.(.((((((....))))))).)).)))((((....)))).........))))......... ( -18.50)
>DroSim_CAF1 47476 101 - 1
ACGUCGCUUCUUCAUUUCACCUUUAUUCUCAGCGGCUCCUCCUCCUUAAUUCUUUGAGGGCAGCGCCAGACAUUAGUCUUUCCUUUCCGAGAUCCCAAACC
..........................((((...(((..((.(.((((((....))))))).)).)))((((....)))).........))))......... ( -18.50)
>DroEre_CAF1 47047 96 - 1
GCGUCGCUUCUGCAGUUUACCUUUAUUCCCAAGGGCCCCU---CCUUAAUUCUUUGGGGGCAGCGCCAGACAUUAGUCUCCCCGUUCCGAGACCCCGCA--
(((((((..((((......(((((......)))))((((.---............)))))))).))..)))....(((((........)))))...)).-- ( -26.92)
>DroYak_CAF1 45683 96 - 1
ACGUCGCUUCUUCAUUUUACCUUUAUUCUCAACGGCUCCA---CCUCAAUUCUUUGAGGGCAGCGCCAGACAUUAGUCUC--CGUUCCAAGACCCCCAACC
..(((............................(((.(..---((((((....))))))...).)))((((....)))).--........)))........ ( -19.30)
>consensus
ACGUCGCUUCUUCAUUUCACCUUUAUUCUCAACGGCUCCUCCUCCUUAAUUCUUUGAGGGCAGCGCCAGACAUUAGUCUUUCCGUUCCGAGAUCCCAAACC
..........................((((...(((.(....(((((((....)))))))..).)))((((....)))).........))))......... (-14.74 = -15.22 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:13 2006