Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,584,981 – 1,585,101 |
Length | 120 |
Max. P | 0.578947 |
Location | 1,584,981 – 1,585,101 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.61 |
Mean single sequence MFE | -51.08 |
Consensus MFE | -40.35 |
Energy contribution | -40.60 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.17 |
Mean z-score | -2.33 |
Structure conservation index | 0.79 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.578947 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1584981 120 + 22407834 AGUCCCUCCUAUGUCCAACCGCUGGUCUUCUUUGACAGAAUGACCUUCUGCAUGUGCUCAUCCGCGGUGUGGGUGGUGUGACUUCCGCCCGCGUGACGCGGAGUGCACUUGACCAUGGGA ......(((((((..(((..((.((((((((.....)))).))))....))..((((...((((((.(((((((((........)))))))))...))))))..)))))))..))))))) ( -54.00) >DroSec_CAF1 63504 120 + 1 AGUCCCUCUUAUGUCCAACCGCUGGUCUUUUUGGACAGAAUGACCUUCUGCAUGUGCUCAUCCGCGGUGUGGGUGGUGUGACUUCCGCCCGCGUGACGCGGAGUGCACUUGACCAUGGGA ......(((((((..(((..((.((((.((((....)))).))))....))..((((...((((((.(((((((((........)))))))))...))))))..)))))))..))))))) ( -50.30) >DroSim_CAF1 65811 120 + 1 AGUCCCUCCUAUGUCCAACCGCUGGUCUUCUUGGACAGAAUGACCUUCUGCAUGUGCUCAUCCGCGGUGUGGGUGGUGUGGCUUCCGCCCGCGUGACGCGGAGUGCACUUGACCAUGGGA ......(((((((..(((..((.((((((((.....)))).))))....))..((((...((((((.(((((((((........)))))))))...))))))..)))))))..))))))) ( -54.00) >DroEre_CAF1 64973 120 + 1 AGUCUAUCCUAUGUCCAUCCGGUGUUCUUCUUGGAGAGAAUGACCUUCUGCAUGUGCUCAUCCGCGGUGUGGGUGGUGUGACUUCCGCCCGCGUGACGCGGAGUGCACUUGACCAUGGGA ......(((((((..((...(((((((((......)))))).)))........((((...((((((.(((((((((........)))))))))...))))))..)))).))..))))))) ( -51.00) >DroYak_CAF1 63615 119 + 1 AGUCU-CCCUAUGUCCAUCCGCUGUUCUUCUUGGAGAGAAUGACCUUCUGCAUGUGCUCAUCCGCCGUGUGGGUGGUGUGACUGCCGCCCGCGUGACGCGGAGUGCACUUGACCAUAGGA .....-.((((((..((...((.(((.(((((...))))).))).....))..((((...(((((((((((((((((......))))))))))))..)))))..)))).))..)))))). ( -46.90) >DroAna_CAF1 94407 120 + 1 UGUGCUACCUAUUUCCAGCCAGUGUUCCUCUUGGAGAGAACCACCUUCUGCAUGUGGUCCUCGGCGGUGUGGGUGGUGUGGCUGCCACCGGCGUGCCGCGGUGUGCACUUCACCAUGGGU ...(((((((((..((.(((.....(((....)))(((.(((((.........))))).)))))))).)))))))))(((((((((...)))).)))))((((.......))))...... ( -50.30) >consensus AGUCCCUCCUAUGUCCAACCGCUGGUCUUCUUGGACAGAAUGACCUUCUGCAUGUGCUCAUCCGCGGUGUGGGUGGUGUGACUUCCGCCCGCGUGACGCGGAGUGCACUUGACCAUGGGA ......(((((((..((.......((((....))))((((.....))))....((((...((((((.(((((((((........)))))))))...))))))..)))).))..))))))) (-40.35 = -40.60 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:05 2006