Locus 5189

Sequence ID 2L_DroMel_CAF1
Location 14,690,648 – 14,690,740
Length 92
Max. P 0.708228
window8260

overview

Window 0

Location 14,690,648 – 14,690,740
Length 92
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 92.42
Mean single sequence MFE -23.68
Consensus MFE -18.81
Energy contribution -19.53
Covariance contribution 0.72
Combinations/Pair 1.08
Mean z-score -2.61
Structure conservation index 0.79
SVM decision value 0.37
SVM RNA-class probability 0.708228
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14690648 92 + 22407834
UCUCGAACUGGAAAAAUGAAUUAUGCUGGUGGAAAAAUCAAAGCCGGCAAAGGCAAUCAUUUCAUGCCACA-GACAAUUUGUUUACAGAUCUC
....((.(((...(((..((((.(((((((.((....))...)))))))..((((.........))))...-...))))..))).))).)).. ( -23.70)
>DroSec_CAF1 46660 92 + 1
UCUCGAACUGGAAAAAUGAAUUAUGCUGGUGGAAAAAUCAAAGCCGGCAAAGGCAAUCAUUUCAUGCCACA-GACAAUUUGUUUACAGAUCUC
....((.(((...(((..((((.(((((((.((....))...)))))))..((((.........))))...-...))))..))).))).)).. ( -23.70)
>DroSim_CAF1 46860 92 + 1
UCUCGAACUGGAAAAAUGAAUUAUGCUGGUGGAAAAAUCAAAGCCGGCAAAGGCAAUCAUUUCAUGCCACA-GACAAUUUGUUUACAGAUCUC
....((.(((...(((..((((.(((((((.((....))...)))))))..((((.........))))...-...))))..))).))).)).. ( -23.70)
>DroEre_CAF1 46319 92 + 1
UCUCGAACUGGAAAAAUGAAUUAUGCUGGUGGAAAAAUCAAAGCCGGCAACGGCAAUCAUUUCAUGCCACA-GACAAUUUGUUUACAGAUCUC
....((.(((...(((..((((.(((((((.((....))...)))))))..((((.........))))...-...))))..))).))).)).. ( -23.80)
>DroYak_CAF1 44974 92 + 1
UCUCGAACUGAAAAAAUGAAUUAUGCUGGUGGAAAAAUCAAAGCCGGCAAAGGCAAUCAUUUCAUGCCACA-AACAAUUUGUUUACAGAUUCC
....((((((...(((..((((.(((((((.((....))...)))))))..((((.........))))...-...))))..))).))).))). ( -22.60)
>DroAna_CAF1 43351 87 + 1
UCUCGGGCUGGAAAAAUGAAUUAUGCUGGUGGAAAAAUCAAAGCCGG------CAAUCGUUUCAUUCCUCAAAACAAUUUGUUUACGGUGCCC
....((((.((((((((((....(((((((.((....))...)))))------)).))))))..))))...((((.....)))).....)))) ( -24.60)
>consensus
UCUCGAACUGGAAAAAUGAAUUAUGCUGGUGGAAAAAUCAAAGCCGGCAAAGGCAAUCAUUUCAUGCCACA_GACAAUUUGUUUACAGAUCUC
....((.(((...(((..((((.(((((((.((....))...)))))))..((((.........)))).......))))..))).))).)).. (-18.81 = -19.53 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:12 2006