Locus 5186

Sequence ID 2L_DroMel_CAF1
Location 14,680,686 – 14,680,785
Length 99
Max. P 0.730042
window8257

overview

Window 7

Location 14,680,686 – 14,680,785
Length 99
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 75.56
Mean single sequence MFE -19.40
Consensus MFE -13.48
Energy contribution -13.56
Covariance contribution 0.08
Combinations/Pair 1.20
Mean z-score -1.43
Structure conservation index 0.69
SVM decision value 0.42
SVM RNA-class probability 0.730042
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14680686 99 - 22407834
UUAUUGUAAAUUGUCUGGCCAAAUAUUUAUUGGUGCGCAUAUUUUAGCACCGAA-ACGGGCUAACCGAAAAUAUGUG--------CCGAUUUAAAAAAAAAAAUAUCC
......(((((((....(((((.......)))))((((((((((((((.(((..-.))))))).....)))))))))--------))))))))............... ( -24.30)
>DroSim_CAF1 37464 98 - 1
UUAUUGUAAAUUGCCUGGCCAAAUAUUUAUUGGUGCGCAUAUUUUAGCACCGAA-ACGGGCUAACCGAAAAUAUGUG--------CCGAUUUUUGAA-AAAAAUAUCC
................(((...((((((.(((((((..........))))))).-.(((.....))).))))))..)--------))(((((((...-.)))).))). ( -23.50)
>DroEre_CAF1 36926 106 - 1
UUAUUGUAAAUUGCCUGGCCAAAUAUUCAUUGUUGCGCAUAUUUCAGCACCGAA-GCGGGCUAACCAAAAAAAAAUAUAUAUCUACCGAUUUUUACC-AAAAAUAUCU
.....((((((((..(((((.....(((..(((((.........)))))..)))-...)))))..)))............(((....))).))))).-.......... ( -13.40)
>DroYak_CAF1 35486 97 - 1
UUAUUGCAAAUUGCCUGGCCAAAUAUUCAUUGGUGCGCAUAUUUUAGCAUCGAA-ACGGGCUAACCAAAAAAAAGUA--------CAGAUUUUUAC--AAAAAUAUCA
.((((.....(((..(((((.........(((((((..........))))))).-...)))))..))).....))))--------..(((.(((..--..))).))). ( -14.32)
>DroAna_CAF1 33966 86 - 1
GCUUUUUGAAUUGCUUGGCCAAAUAUUUAUUGGCGCGCAUAUUUUAGCACCAAGCACUGGCGAACCGAACAA-----------------UUCG-----AAAUCCACUU
(..((((((((((.((((...........((((.((..........)).))))((....))...)))).)))-----------------))))-----)))..).... ( -21.50)
>consensus
UUAUUGUAAAUUGCCUGGCCAAAUAUUUAUUGGUGCGCAUAUUUUAGCACCGAA_ACGGGCUAACCGAAAAAAAGUA________CCGAUUUUUAA__AAAAAUAUCC
..........(((..(((((.........(((((((..........))))))).....)))))..)))........................................ (-13.48 = -13.56 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:09 2006