Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,678,614 – 14,678,716 |
Length | 102 |
Max. P | 0.996423 |
Location | 14,678,614 – 14,678,716 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 79.98 |
Mean single sequence MFE | -22.80 |
Consensus MFE | -15.10 |
Energy contribution | -16.34 |
Covariance contribution | 1.24 |
Combinations/Pair | 1.19 |
Mean z-score | -2.99 |
Structure conservation index | 0.66 |
SVM decision value | 2.70 |
SVM RNA-class probability | 0.996423 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14678614 102 + 22407834 AAUUUCUCGAAGCGCAAAACAAUAAUCUAUAUAUCACCACAGUCUAUUUUGCAUAU---UUAUUAUUUAUGUGCAGAAUAGGAAGUGAACAUAUGGGUUCAUAUA .......................(((((((((.((((.....((((((((((((((---.........))))))))))))))..))))..)))))))))...... ( -24.20) >DroSec_CAF1 32946 88 + 1 A--------------AAAACAAAGAUCUAUAUAUCA---CAGUCUUUUUUGCAUUUAAAUUAUUAUUUGUGGGCGGAAAAGGAAGUGAACAUAUGGGUUGAUAUA .--------------........(((((((((.(((---(..((((((((((...(((((....)))))...))))))))))..))))..)))))))))...... ( -24.60) >DroSim_CAF1 35432 88 + 1 A--------------AAAACAAAGAUCUAUAUAUCA---CAAUCUGUUUUGCAUAUAAAUUAUUAUUUGUGUGCGGAAAAGGAAGUGAACAUAUGGGUUGAUAUA .--------------........(((((((((.(((---(..(((.((((((((((((((....)))))))))))))).)))..))))..)))))))))...... ( -26.70) >DroEre_CAF1 34900 99 + 1 AAUUUCUUGAAGCGCAAAACAAAGAUCUAUUUAUCA---CAGUCUGUUUUGCAUAU---UUAUUAUCUGUGUGCACAAUAGGAUGUGAGCAUAUUGGUUGAUAUA .......................((((......(((---((..(((((.(((((((---.........))))))).)))))..))))).......))))...... ( -20.92) >DroYak_CAF1 33470 99 + 1 AAUUUCUUGAAGCGCAAAACAAAGAUCUAUAUUUCA---CAGUCUGUUUUGCAUAU---UUAUUAUCUGUGUGCAUAAAAGGAAGUGAACAUACUGGUUGAUAUA .......................((((..(((((((---(..(((....(((((((---.........)))))))....)))..))))).)))..))))...... ( -17.60) >consensus AAUUUCU_GAAGCGCAAAACAAAGAUCUAUAUAUCA___CAGUCUGUUUUGCAUAU___UUAUUAUUUGUGUGCAGAAAAGGAAGUGAACAUAUGGGUUGAUAUA .......................(((((((((.(((......((((((((((((((............))))))))))))))...)))..)))))))))...... (-15.10 = -16.34 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:08 2006