| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,675,602 – 14,675,702 |
| Length | 100 |
| Max. P | 0.982507 |
| Location | 14,675,602 – 14,675,702 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 93.63 |
| Mean single sequence MFE | -27.43 |
| Consensus MFE | -26.64 |
| Energy contribution | -25.70 |
| Covariance contribution | -0.94 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.97 |
| SVM decision value | 1.92 |
| SVM RNA-class probability | 0.982507 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14675602 100 - 22407834 UCAGUCAUUUUCGAUUUCUUGCACGCGCCAGUCGGCGGACAAAAAGUCAUUGGAAAUGUGACUGAAGUGAAGUGAGUGCGAAUGAGUG-UGAAUGAGUACU ..(.((((((.((.((..((((((.((((....))))..((...((((((.......))))))....))......))))))..)).))-.)))))).)... ( -27.90) >DroSec_CAF1 30067 96 - 1 UCAGUCAUUUUCGAUUUCUUGCACGCGCCAGUCGGCGGACAAAAAGUCAUUGGAAAUGUGACUGAA-----GUGAGUGCGAAUGAGUGGUGAAUGAGUACU ..(.((((((.(.((((.((((((.((((....))))..((...((((((.......))))))...-----.)).))))))..)))).).)))))).)... ( -29.30) >DroSim_CAF1 32457 96 - 1 UCAGUCAUUUUCGAUUUCUUGCACGCGCCAGUCGGCGGACAAAAAGUCAUUGGAAAUGUGACUGAA-----GUGAGUGCGAAUGAGUGGUGAAUGAGUACU ..(.((((((.(.((((.((((((.((((....))))..((...((((((.......))))))...-----.)).))))))..)))).).)))))).)... ( -29.30) >DroEre_CAF1 30227 95 - 1 UCAGUCAUUUUCGAUUUCUUGCACGCGCCAAUCGGCGGACAAAAAGUCAUUGGAAAUGUGAUUGAA-----GUGAGUGCGAAUGAGUG-UGAAUGAGUACU ..(.((((((.((.((..((((((.((((....))))..((...((((((.......))))))...-----.)).))))))..)).))-.)))))).)... ( -25.60) >DroYak_CAF1 30484 95 - 1 UCAGUCAUUUUCGAUUUCUUGCACGCGCCAGUCGGCGGACAAAAAGUCAUUGGAAAUGUGACUGAA-----GUGAGUGCGAAUGAGUG-UGAAUGAGUACU ..(.((((((.((.((..((((((.((((....))))..((...((((((.......))))))...-----.)).))))))..)).))-.)))))).)... ( -27.90) >DroAna_CAF1 29517 95 - 1 UUGGUCGCUUUGGAUUUCUUGCACGCGCCGGUCGGCGGACAAAGAGUGGUUGAAAAUGUGACUGAA-----GUGAGUGCGAAUGAGUG-UGAAUGAGUACU (..((((((((.(((..(((.....((((....))))......)))..))).)))..)))))..).-----...(((((..((.....-...))..))))) ( -24.60) >consensus UCAGUCAUUUUCGAUUUCUUGCACGCGCCAGUCGGCGGACAAAAAGUCAUUGGAAAUGUGACUGAA_____GUGAGUGCGAAUGAGUG_UGAAUGAGUACU (((((((((((((((..(((.....((((....))))......)))..)))))))..)))))))).........(((((..((.........))..))))) (-26.64 = -25.70 + -0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:07 2006