Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,673,763 – 14,673,891 |
Length | 128 |
Max. P | 0.998193 |
Location | 14,673,763 – 14,673,854 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 100.00 |
Mean single sequence MFE | -25.10 |
Consensus MFE | -25.10 |
Energy contribution | -25.10 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.38 |
Structure conservation index | 1.00 |
SVM decision value | 3.00 |
SVM RNA-class probability | 0.998061 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14673763 91 + 22407834 UUUGAAUUCAAUUGAAUUAAUUUGGAUUUUAUGGUUCAUUUAGAUGGGCCAUUUUCGGGCGCUAAUUGAAGAGCCAGAUCCGAUAAGCUCG ....(((((....)))))...(((((((...((((((.(((((.((((((.......))).))).))))))))))))))))))........ ( -25.10) >DroSec_CAF1 28271 91 + 1 UUUGAAUUCAAUUGAAUUAAUUUGGAUUUUAUGGUUCAUUUAGAUGGGCCAUUUUCGGGCGCUAAUUGAAGAGCCAGAUCCGAUAAGCUCG ....(((((....)))))...(((((((...((((((.(((((.((((((.......))).))).))))))))))))))))))........ ( -25.10) >DroSim_CAF1 30194 91 + 1 UUUGAAUUCAAUUGAAUUAAUUUGGAUUUUAUGGUUCAUUUAGAUGGGCCAUUUUCGGGCGCUAAUUGAAGAGCCAGAUCCGAUAAGCUCG ....(((((....)))))...(((((((...((((((.(((((.((((((.......))).))).))))))))))))))))))........ ( -25.10) >DroEre_CAF1 28327 91 + 1 UUUGAAUUCAAUUGAAUUAAUUUGGAUUUUAUGGUUCAUUUAGAUGGGCCAUUUUCGGGCGCUAAUUGAAGAGCCAGAUCCGAUAAGCUCG ....(((((....)))))...(((((((...((((((.(((((.((((((.......))).))).))))))))))))))))))........ ( -25.10) >DroYak_CAF1 28640 91 + 1 UUUGAAUUCAAUUGAAUUAAUUUGGAUUUUAUGGUUCAUUUAGAUGGGCCAUUUUCGGGCGCUAAUUGAAGAGCCAGAUCCGAUAAGCUCG ....(((((....)))))...(((((((...((((((.(((((.((((((.......))).))).))))))))))))))))))........ ( -25.10) >consensus UUUGAAUUCAAUUGAAUUAAUUUGGAUUUUAUGGUUCAUUUAGAUGGGCCAUUUUCGGGCGCUAAUUGAAGAGCCAGAUCCGAUAAGCUCG ....(((((....)))))...(((((((...((((((.(((((.((((((.......))).))).))))))))))))))))))........ (-25.10 = -25.10 + -0.00)
Location | 14,673,763 – 14,673,854 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 100.00 |
Mean single sequence MFE | -15.50 |
Consensus MFE | -15.50 |
Energy contribution | -15.50 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.51 |
Structure conservation index | 1.00 |
SVM decision value | 0.85 |
SVM RNA-class probability | 0.865866 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14673763 91 - 22407834 CGAGCUUAUCGGAUCUGGCUCUUCAAUUAGCGCCCGAAAAUGGCCCAUCUAAAUGAACCAUAAAAUCCAAAUUAAUUCAAUUGAAUUCAAA ..........(((((.(((.((......)).))).))..((((..(((....)))..))))....))).....(((((....))))).... ( -15.50) >DroSec_CAF1 28271 91 - 1 CGAGCUUAUCGGAUCUGGCUCUUCAAUUAGCGCCCGAAAAUGGCCCAUCUAAAUGAACCAUAAAAUCCAAAUUAAUUCAAUUGAAUUCAAA ..........(((((.(((.((......)).))).))..((((..(((....)))..))))....))).....(((((....))))).... ( -15.50) >DroSim_CAF1 30194 91 - 1 CGAGCUUAUCGGAUCUGGCUCUUCAAUUAGCGCCCGAAAAUGGCCCAUCUAAAUGAACCAUAAAAUCCAAAUUAAUUCAAUUGAAUUCAAA ..........(((((.(((.((......)).))).))..((((..(((....)))..))))....))).....(((((....))))).... ( -15.50) >DroEre_CAF1 28327 91 - 1 CGAGCUUAUCGGAUCUGGCUCUUCAAUUAGCGCCCGAAAAUGGCCCAUCUAAAUGAACCAUAAAAUCCAAAUUAAUUCAAUUGAAUUCAAA ..........(((((.(((.((......)).))).))..((((..(((....)))..))))....))).....(((((....))))).... ( -15.50) >DroYak_CAF1 28640 91 - 1 CGAGCUUAUCGGAUCUGGCUCUUCAAUUAGCGCCCGAAAAUGGCCCAUCUAAAUGAACCAUAAAAUCCAAAUUAAUUCAAUUGAAUUCAAA ..........(((((.(((.((......)).))).))..((((..(((....)))..))))....))).....(((((....))))).... ( -15.50) >consensus CGAGCUUAUCGGAUCUGGCUCUUCAAUUAGCGCCCGAAAAUGGCCCAUCUAAAUGAACCAUAAAAUCCAAAUUAAUUCAAUUGAAUUCAAA ..........(((((.(((.((......)).))).))..((((..(((....)))..))))....))).....(((((....))))).... (-15.50 = -15.50 + 0.00)
Location | 14,673,784 – 14,673,891 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 96.11 |
Mean single sequence MFE | -33.18 |
Consensus MFE | -31.18 |
Energy contribution | -31.58 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.99 |
Structure conservation index | 0.94 |
SVM decision value | 3.03 |
SVM RNA-class probability | 0.998193 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14673784 107 + 22407834 UUGGAUUUUAUGGUUCAUUUAGAUGGGCCAUUUUCGGGCGCUAAUUGAAGAGCCAGAUCCGAUAAGCUCGUCCGUCCAGAUGUG--CUGGGAAAAUAAAUAGAGCACAC (((((((...((((((.(((((.((((((.......))).))).))))))))))))))))))...((((.....(((((.....--)))))..........)))).... ( -33.36) >DroSec_CAF1 28292 109 + 1 UUGGAUUUUAUGGUUCAUUUAGAUGGGCCAUUUUCGGGCGCUAAUUGAAGAGCCAGAUCCGAUAAGCUCGUCCGUCCAGAUGUGCGCUGGGAAAAUAAAUAGAGCACCC (((((((...((((((.(((((.((((((.......))).))).))))))))))))))))))...((((.....(((((.......)))))..........)))).... ( -33.06) >DroSim_CAF1 30215 109 + 1 UUGGAUUUUAUGGUUCAUUUAGAUGGGCCAUUUUCGGGCGCUAAUUGAAGAGCCAGAUCCGAUAAGCUCGUCCGUCCAGAUGUGCGCUGGGAAAAUAAAUAGAGCACCC (((((((...((((((.(((((.((((((.......))).))).))))))))))))))))))...((((.....(((((.......)))))..........)))).... ( -33.06) >DroEre_CAF1 28348 103 + 1 UUGGAUUUUAUGGUUCAUUUAGAUGGGCCAUUUUCGGGCGCUAAUUGAAGAGCCAGAUCCGAUAAGCUCGU----CCAGAUGUG--CUGGGAAAAUAAAUAGAGCACAC (((((((...((((((.(((((.((((((.......))).))).))))))))))))))))))...((((.(----((((.....--)))))..........)))).... ( -33.20) >DroYak_CAF1 28661 103 + 1 UUGGAUUUUAUGGUUCAUUUAGAUGGGCCAUUUUCGGGCGCUAAUUGAAGAGCCAGAUCCGAUAAGCUCGU----CCAGAUGUG--CUGGGAAAAUAAAUAGAGCACAC (((((((...((((((.(((((.((((((.......))).))).))))))))))))))))))...((((.(----((((.....--)))))..........)))).... ( -33.20) >consensus UUGGAUUUUAUGGUUCAUUUAGAUGGGCCAUUUUCGGGCGCUAAUUGAAGAGCCAGAUCCGAUAAGCUCGUCCGUCCAGAUGUG__CUGGGAAAAUAAAUAGAGCACAC (((((((...((((((.(((((.((((((.......))).))).))))))))))))))))))...((((.....(((((.......)))))..........)))).... (-31.18 = -31.58 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:06 2006