Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,666,665 – 14,666,761 |
Length | 96 |
Max. P | 0.588201 |
Location | 14,666,665 – 14,666,761 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 83.50 |
Mean single sequence MFE | -29.00 |
Consensus MFE | -20.78 |
Energy contribution | -21.68 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.17 |
Mean z-score | -1.83 |
Structure conservation index | 0.72 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.588201 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14666665 96 - 22407834 AGUUGCU---GCUGCAAUUGCAAUUUCGGUUUUUUGU------------ACUGAGCAGCGAAUUGUGUAAUCGCGAUGAGCUUUCAGCGAUAACCGACAUUCAAAAGUGGG .....(.---.((....(((.(((.((((((..(((.------------.(((((.(((..((((((....))))))..))))))))))).)))))).)))))).))..). ( -28.50) >DroSec_CAF1 21227 99 - 1 AGUUGCUGCUGCUGCAAUUGCAAUUUCGGUUUUUUGU------------GCUGAUCAGCGAAUUGUGUAAUCGCGAUGAGCUUUCAGCGAUAACCGACAUUAAAAAGUGGG (((((((((....)))...))))))((((((.....(------------(((((..(((..((((((....))))))..))).))))))..))))))((((....)))).. ( -32.40) >DroSim_CAF1 22901 99 - 1 AGUUGCUGCUGCUGCAAUUGCAAUUUCGGUUUUUUGU------------GCUGAUCAGCGAAUUGUGUAAUCGCGAUGAGCUUUCAGCGAUAACCGACAUUAAAAAGUGGG (((((((((....)))...))))))((((((.....(------------(((((..(((..((((((....))))))..))).))))))..))))))((((....)))).. ( -32.40) >DroEre_CAF1 21284 96 - 1 AGUUGCU---GCUGCAAUUGCAAUUUCGGCUUUUUGU------------GCUGGGCAGCGAAUUGUGUAAUCGCGAUGAGCUUUCAGCGAUAACCGACAUUAAAACGUGGC ....((.---.((((....)))...((((.((....(------------((((((.(((..((((((....))))))..))))))))))..)))))).........)..)) ( -29.40) >DroYak_CAF1 21658 96 - 1 AGUUGCU---GCUGCAAUUGCAAUUUCGGUUUUUUGU------------GCUGAGCAGCGAAUUGUGUAAUCGCGAUGAGCUUUCAGCGAUAACCGACAAUAAAAAGUGGG .....(.---.((((....))....((((((.....(------------((((((.(((..((((((....))))))..))))))))))..))))))........))..). ( -31.90) >DroAna_CAF1 21098 98 - 1 GGUCGCU---GUUGCAACUACAAUUUCGUUUUUUUCUUUCGAGUGUUAAGCUGGGGAGUGAAUUGUGUAAUCAAGAUGAGCUUUCUGCGAUAAUCA----CAAAA------ .(((((.---(..((...((((((((.........((..(.(((.....))).)..)).))))))))...((.....))))...).))))).....----.....------ ( -19.40) >consensus AGUUGCU___GCUGCAAUUGCAAUUUCGGUUUUUUGU____________GCUGAGCAGCGAAUUGUGUAAUCGCGAUGAGCUUUCAGCGAUAACCGACAUUAAAAAGUGGG ((((((.......))))))......((((((.((...............((((((.(((..((((((....))))))..))))))))))).)))))).............. (-20.78 = -21.68 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:00 2006