Locus 5179

Sequence ID 2L_DroMel_CAF1
Location 14,666,126 – 14,666,235
Length 109
Max. P 0.924311
window8246

overview

Window 6

Location 14,666,126 – 14,666,235
Length 109
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 85.04
Mean single sequence MFE -24.92
Consensus MFE -22.35
Energy contribution -21.79
Covariance contribution -0.57
Combinations/Pair 1.14
Mean z-score -2.02
Structure conservation index 0.90
SVM decision value 1.16
SVM RNA-class probability 0.924311
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14666126 109 + 22407834
-------UGGGAGAUAAAUGUGCAAAUGAUUUGCCAACUGCGAUUUAUGCCACAACGGCUUUUUCUCCACAAGCCUCUUUCUCUCGCUUUUUAUGACUACCAUAAAAAUGUUCCAC
-------.((((((....((((...((((.((((.....)))).))))..))))..(((((.........)))))....))))))((((((((((.....)))))))).))..... ( -26.10)
>DroSec_CAF1 20704 108 + 1
-------UGGGAGAUAAAUGUGCAAAUGAUUUGCCAACUGCGAUUUAUGCCACAACGGCUUUUUCUCCACA-GCCUCUUUCUCUCGCUUUUUAUGACCACCAUAAAAAUGUUCCAC
-------.((((((....((((...((((.((((.....)))).))))..))))..((((..........)-)))....))))))((((((((((.....)))))))).))..... ( -25.10)
>DroSim_CAF1 22378 108 + 1
-------UGGGAGAUAAAUGUGCAAAUGAUUUGCCAACUGCGAUUUAUGCCACAACGGCUUUUUCUCCACA-GCCUCUUUCUCUCGCUUUUUAUGACCACCAUAAAAAUGUUCCAC
-------.((((((....((((...((((.((((.....)))).))))..))))..((((..........)-)))....))))))((((((((((.....)))))))).))..... ( -25.10)
>DroEre_CAF1 20766 115 + 1
UUCGGCUCGGGAGAUAAAUGUGCAAAUGAUUUGCCAACUGCGAUUUAUGCCACAACGGCUUUUCUUCCACA-GCCUCUUUCUCUCGCUUUUUAUGACUGCCAUAAAAAUGUUCCGA
.((((..(((((((....((((...((((.((((.....)))).))))..))))..((((..........)-)))....))))))..((((((((.....)))))))).)..)))) ( -29.50)
>DroYak_CAF1 21147 94 + 1
-------CGGGAGAUAAAUGUGCAAAUGAUUUGCCAACUGCGAUUUAUGCCACAACGG---------------CCUCUUUCUCUCGCUUUUUAUGACUACCAUAAAAGUGUUCCAC
-------((((((((((((.((((..((......))..))))))))).(((.....))---------------).....))))))).((((((((.....))))))))........ ( -20.90)
>DroAna_CAF1 19882 105 + 1
-------CAGGAGAUAAAUGUGCAAAUGAUUUGCCAACCGCGAUUUAUGCCACAACGGUUCUUUUUUU--A-GCCUCUUUCUCUUACUCUUUAUGAGCCCCAUAAAG-CGAGUGAC
-------.((((((....((((...((((.((((.....)))).))))..))))..((((........--)-)))....))))))((((((((((.....)))))).-.))))... ( -22.80)
>consensus
_______CGGGAGAUAAAUGUGCAAAUGAUUUGCCAACUGCGAUUUAUGCCACAACGGCUUUUUCUCCACA_GCCUCUUUCUCUCGCUUUUUAUGACCACCAUAAAAAUGUUCCAC
........((((((....((((...((((.((((.....)))).))))..))))..(((.............)))....))))))..((((((((.....))))))))........ (-22.35 = -21.79 +  -0.57)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:59 2006