Locus 5176

Sequence ID 2L_DroMel_CAF1
Location 14,662,720 – 14,662,821
Length 101
Max. P 0.934210
window8241

overview

Window 1

Location 14,662,720 – 14,662,821
Length 101
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 96.57
Mean single sequence MFE -16.72
Consensus MFE -15.22
Energy contribution -15.38
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.51
Structure conservation index 0.91
SVM decision value 1.23
SVM RNA-class probability 0.934210
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14662720 101 + 22407834
------AACUCAUCCUCCGACUUACGAUAAAUUCGCUGCAAUAAGCCGGAUUAAAUAUUGCAGGUCGAGUCAAAGACCAAUAAAAAUGCAUUUAAUCCCCCAACCAU
------............................(((......))).((((((((...((((((((........))))........))))))))))))......... ( -17.20)
>DroSec_CAF1 17353 101 + 1
------AACUCAUCCUCCGACUUACGAUAAAUUCGCUGCAAUAAGCCGGAUUAAAUAUUGCAGGUCGAGUCAAAGACCAAUAAAAAUGCAUUUAAUCCCCCAACCAU
------............................(((......))).((((((((...((((((((........))))........))))))))))))......... ( -17.20)
>DroSim_CAF1 18809 101 + 1
------AACUCAUCCUCCGACUUACGAUAAAUUCGCUGCAAUAAGCCGGAUUAAAUAUUGCAGGUCGAGUCAAAGACCAAUAAAAAUGCAUUUAAUCCCCCAACCAU
------............................(((......))).((((((((...((((((((........))))........))))))))))))......... ( -17.20)
>DroEre_CAF1 17358 101 + 1
------AACUCAUCCUCCGACUUACGAUAAAUUCGCCGCAAUAAGCCGGAUUAAAUAUUGCAGGUCGAGUCAAAGACCAAUAAAAAUGCAUUUAAUCCCCCAACCAU
------..................(((.....)))..((.....)).((((((((...((((((((........))))........))))))))))))......... ( -16.20)
>DroYak_CAF1 17758 101 + 1
------AACUCAUCCUCCGACUUACGAUAAAUUCGCCGCAAUAAGCCGGAUUAAAUAUUGCAGGUCGAGUCAAAGACCAAUAAAAAUGCAUUUAAUCCCCCAACCAU
------..................(((.....)))..((.....)).((((((((...((((((((........))))........))))))))))))......... ( -16.20)
>DroAna_CAF1 16853 107 + 1
UCCCCAAACUCAUCCUCGGACUUACGAUAAAUUCGCUGCAAUAAGCUGGAUUAAAUAUUGCAAGUCGAGUCAAAGACCAAUAAAAAUGCAUUUAAUCCCCCAACCAU
..............((((.((((.(((((((((((((......))).)))))...))))).))))))))...................................... ( -16.30)
>consensus
______AACUCAUCCUCCGACUUACGAUAAAUUCGCUGCAAUAAGCCGGAUUAAAUAUUGCAGGUCGAGUCAAAGACCAAUAAAAAUGCAUUUAAUCCCCCAACCAU
........................(((.....)))..((.....)).((((((((...((((((((........))))........))))))))))))......... (-15.22 = -15.38 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:54 2006