Locus 5175

Sequence ID 2L_DroMel_CAF1
Location 14,660,915 – 14,661,010
Length 95
Max. P 0.538841
window8240

overview

Window 0

Location 14,660,915 – 14,661,010
Length 95
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 81.05
Mean single sequence MFE -20.02
Consensus MFE -12.68
Energy contribution -12.68
Covariance contribution 0.00
Combinations/Pair 1.21
Mean z-score -1.53
Structure conservation index 0.63
SVM decision value 0.01
SVM RNA-class probability 0.538841
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14660915 95 + 22407834
UGUAAAUUGUUUUGGGCCUUAAAUGGGGUGAGCGCCAAGCAGCAACAAGAGUAAUACAAUAG-GCAUUGUGGAAAAUU---CAAGUGGAAAAUAAAACA
.......(((((((..((.....((..((..((.....)).))..)).((((..((((((..-..))))))....)))---)....))....))))))) ( -16.10)
>DroPse_CAF1 21626 87 + 1
UGUAAAUUGUUUUGGGCCUUAAAUGGGGCGAGUGG----CAGCCACAAA---UACACAAUGGAGCAUUGUGG-----CAUGGAAAUGGAAAAUAAAACA
.......(((((((.(((((....)))))..((((----...))))...---..(((((((...))))))).-----(((....))).....))))))) ( -21.20)
>DroEre_CAF1 15645 90 + 1
UGUAAAUUGUUUUAGGCCUUAAAUGGGGUGAGCGCCAAGCAGUAACAAGGGUAAUACAAUGG-GCAUUGUGG-----C---CCAGUGGAAAAUAAAACA
.......((((((((((((((.......)))).)))....................((.(((-((......)-----)---))).)).....))))))) ( -21.20)
>DroYak_CAF1 16012 90 + 1
UGUAAAUUGUUUUGGGCCUUAAAUGGGGUGAGUGCCAAGCAGCAAAAAGAGUAAUACAAUGG-GCAUUGUGG-----C---CAAGUGGAAAAUAAAACA
.......((((((((((((((.......)))).)))....................((...(-((......)-----)---)...)).....))))))) ( -16.50)
>DroAna_CAF1 14983 88 + 1
UGUAAAUUGUUUUCGGCCCUAAAUGGGGCGACCGGCUCACAACAACAAAACUAA--CAAUGG-CCAUUGUGG-----C---CAAGUGGAAAAUAAAACA
......((((((((.(((((....)))))....(((.(((((...((.......--...)).-...))))))-----)---).....)))))))).... ( -23.90)
>DroPer_CAF1 24992 87 + 1
UGUAAAUUGUUUUGGGCCUUAAAUGGGGCGAGUGG----CAGCCACAAA---UACACAAUGGAGCAUUGUGG-----CAUGGAAAUGGAAAAUAAAACA
.......(((((((.(((((....)))))..((((----...))))...---..(((((((...))))))).-----(((....))).....))))))) ( -21.20)
>consensus
UGUAAAUUGUUUUGGGCCUUAAAUGGGGCGAGCGCCAAGCAGCAACAAAAGUAAUACAAUGG_GCAUUGUGG_____C___CAAGUGGAAAAUAAAACA
.......(((((((.(((((....))))).........................(((((((...))))))).....................))))))) (-12.68 = -12.68 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:53 2006