Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,659,260 – 14,659,360 |
Length | 100 |
Max. P | 0.784884 |
Location | 14,659,260 – 14,659,360 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 80.51 |
Mean single sequence MFE | -27.28 |
Consensus MFE | -16.42 |
Energy contribution | -16.22 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.12 |
Mean z-score | -2.10 |
Structure conservation index | 0.60 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.784884 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14659260 100 + 22407834 UUUUCUCUUUCUGCGGCGG--UUUAAGGAGAGAAGCAGCAGCAACUUGGCUACUUUUCAACUAGAAGUAGGAGUUGUUGACUGGAAUUGCUCAAUUUGUGUG ((((((((((..((....)--)..)))))))))).((((((((((((..((((((((.....))))))))))))))))).)))(((((....)))))..... ( -31.60) >DroVir_CAF1 11864 77 + 1 ---------------------CUUAGGCAGAGCA----AAACAACUUGGCUACUUUUCAACUAGAAGUAGGAGUUGUUGACUGGAAUUGCUCAAUUUGUGUG ---------------------........(((((----(((((((((..((((((((.....))))))))))))))))........)))))).......... ( -20.40) >DroEre_CAF1 13926 100 + 1 UUUUCUCUUUCUGCGGCGG--UUUAAGGAGAGAAGCAGCAGCAACUUGGCUACUUUUCAACUAGAAGUAGGAGUUGUUGACUGGAAUUGCUCAAUUUGUGUG ((((((((((..((....)--)..)))))))))).((((((((((((..((((((((.....))))))))))))))))).)))(((((....)))))..... ( -31.60) >DroYak_CAF1 14340 100 + 1 UUUUCUCUUUCUGCAGCGG--UUUAAGGAGAGAAGCAGCAGCAACUUGGCUACUUUUCAACUAGAAGUAGGAGUUGUUGACUGGAAUUGCUCAAUUUGUGUG ((((((((((..((....)--)..)))))))))).((((((((((((..((((((((.....))))))))))))))))).)))(((((....)))))..... ( -31.40) >DroMoj_CAF1 14062 79 + 1 -----------------GG--UUUAGACCAAGUA----AAACAACUUGGCUACUUUUCAACUAGAAGUAGGAGUUGUUGACUGGAAUUGCUCAAUUUGUGUG -----------------..--......(((.((.----.((((((((..((((((((.....)))))))))))))))).))))).................. ( -17.60) >DroAna_CAF1 13389 99 + 1 UUUUCUCUUUCGGCUGAAAACGCUAGAGAGAGAGG---CAGCAACUUGGCUACUUUUCAACUAGAAGUAGGAGUUGUUGACUGGAAUUGCUCAAUUUGUGUG .((((((((((((((....).))).))))))))))---(((((((((..((((((((.....)))))))))))))))))((..(((((....)))))..)). ( -31.10) >consensus UUUUCUCUUUCUGC_GCGG__UUUAAGGAGAGAAG___CAGCAACUUGGCUACUUUUCAACUAGAAGUAGGAGUUGUUGACUGGAAUUGCUCAAUUUGUGUG .......................((((..(((......(((((((((..((((((((.....)))))))))))))))))..........)))..)))).... (-16.42 = -16.22 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:52 2006