Locus 5172

Sequence ID 2L_DroMel_CAF1
Location 14,652,376 – 14,652,472
Length 96
Max. P 0.835092
window8235

overview

Window 5

Location 14,652,376 – 14,652,472
Length 96
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 85.89
Mean single sequence MFE -28.42
Consensus MFE -23.01
Energy contribution -22.98
Covariance contribution -0.03
Combinations/Pair 1.14
Mean z-score -2.46
Structure conservation index 0.81
SVM decision value 0.73
SVM RNA-class probability 0.835092
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14652376 96 + 22407834
GCUUGGAAUCGACUUGGAUGAGAUCACCUGCAUGGGUGACAUCGUUUAGGACCGGUAAUUAGUCUUCAUUAUG-AGUGGAGAAAUUGAGUAUGAAAC
(((..(.((((.(((((((((..((((((....))))))..)))))))))..))))......(((((((....-.)))))))..)..)))....... ( -30.20)
>DroSec_CAF1 7158 96 + 1
GCUCUGAAUCGACUUGGAUGAGAUCACCUGCAUGGGUGACAUCGUUUAGGACCGGUAAUUAGUCUUCAUUAUG-AGUGGAGAAAUUGAGUAUGAAAC
((((...((((.(((((((((..((((((....))))))..)))))))))..))))......(((((((....-.)))))))....))))....... ( -30.30)
>DroSim_CAF1 8455 96 + 1
GCUCUGAAUCGACUUGGAUGAGAUCACCUGCAUGGGUGACAUCGUUUAGGACCGGUAAUUAGUCUUCAUUAUG-AGUGGAGAAAUUGAGUAUGAAAC
((((...((((.(((((((((..((((((....))))))..)))))))))..))))......(((((((....-.)))))))....))))....... ( -30.30)
>DroEre_CAF1 6821 91 + 1
G-----AGGCGGAUUGGAUGAGAUCACCUGCAUGGGUGACAUCGUUUAGUACCGGUAAUUAGUUUCCAUUAUG-AGUGGAGAAAUUGGAUAUGCAGC
.-----...((((((((((((..((((((....))))))..))))))))).)))((((((..(((((((....-.))))))).....))).)))... ( -29.60)
>DroYak_CAF1 7263 91 + 1
G-----CAUCGCAUUGGAUGAGAUCACCUGCAUGGGUGACAUCGUUUAGGACCGAUAAUUAGUCUCCAUUAUG-AGUGGAGAAAUUGACUAAAAAAC
.-----.((((..((((((((..((((((....))))))..))))))))...))))......(((((((....-.)))))))............... ( -28.20)
>DroAna_CAF1 6840 92 + 1
GC-----GUCUGGUUGGAUGAGAUCACCUGCAUGGGUGACAUCGUUUAGGCCCAGUAAUUAGUCAUCAUUAUGGAGUGGAGAAAGGGAAUUUAAAGA
..-----..((((((((((((..((((((....))))))..))))))))..)))).......((..((((....))))..))............... ( -21.90)
>consensus
GC____AAUCGACUUGGAUGAGAUCACCUGCAUGGGUGACAUCGUUUAGGACCGGUAAUUAGUCUUCAUUAUG_AGUGGAGAAAUUGAGUAUGAAAC
............(((((((((..((((((....))))))..)))))))))............(((((((......)))))))............... (-23.01 = -22.98 +  -0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:48 2006