Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,651,856 – 14,651,947 |
Length | 91 |
Max. P | 0.815827 |
Location | 14,651,856 – 14,651,947 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 93.63 |
Mean single sequence MFE | -29.74 |
Consensus MFE | -26.67 |
Energy contribution | -26.76 |
Covariance contribution | 0.09 |
Combinations/Pair | 1.12 |
Mean z-score | -1.41 |
Structure conservation index | 0.90 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.815827 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14651856 91 + 22407834 UCAGUGCAAUCGCUCGAU-CAUCGCCUGCGGUGCGCGGUCGCGCUUCAAGCUCCAUUUACGAAAAA-AAAAGCGGAUCGAAGCGAGGGCCAAA ...(.((..(((((((((-(...((.((.((((((....)))))).)).))........((.....-.....))))))).)))))..)))... ( -29.80) >DroSec_CAF1 6642 90 + 1 UCAGUGCAAUCGCUCGAU-CAUCGCCUGCGGUGCGCGGUCGCGCUUCAAGCUCCAUUUACGAAAA--AAAAGCGGAUCGAAGCGAGGCCCAAA ...(((((.((((.((..-...))...)))))))))((((.((((((....(((.(((.......--.)))..)))..)))))).)))).... ( -30.10) >DroSim_CAF1 7940 89 + 1 UCAGUGCAAUCGCUCGAU-CAUCGCCUGCGGUGCGCGGUCGCGCUUCAAGCUCCAUUUACGAAAA---AAAUCGGAUCGAAGCGAGGGCCAAA ...(.((..(((((((((-(...((.((.((((((....)))))).)).))........(((...---...)))))))).)))))..)))... ( -32.30) >DroEre_CAF1 6248 93 + 1 UCAGUGCAAUCGCUCGAUUCAUCGCCUGCGGUGCGCGGUCGCGCUUCAAGCUCCAUUUACGAAAAAAAAAAGCGAAUCAAAGCGAGGGCCAAA ...(((((.((((.(((....)))...)))))))))((((.(((((...(((...(((......)))...)))......)))))..))))... ( -26.50) >DroYak_CAF1 6718 89 + 1 UCAGUGCAAUCGCUCGAU-CAUCGCCUGCGGUGCGCGGUCGCGCUUCAAGCUCCAUUUACGAAAA---AAAGCGGAUCGAAGCGAGGGCCAAA ...(.((..(((((((((-(...((.((.((((((....)))))).)).))........((....---....))))))).)))))..)))... ( -30.70) >DroAna_CAF1 6295 88 + 1 UCUGUGUAGCCGCUUGAU-CGACGCCUGCGGUGCGCGGUCGCGCUUCAAGCUCCAUUUACGAAA----AAAGCGGAUCGAAGCGAGGGCCAAA ...(((((.((((.....-........)))))))))((((.((((((....(((.(((......----)))..)))..))))))..))))... ( -29.02) >consensus UCAGUGCAAUCGCUCGAU_CAUCGCCUGCGGUGCGCGGUCGCGCUUCAAGCUCCAUUUACGAAAA___AAAGCGGAUCGAAGCGAGGGCCAAA ...(((((.((((.((......))...)))))))))((((.((((((....(((...................)))..))))))..))))... (-26.67 = -26.76 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:47 2006