Locus 517

Sequence ID 2L_DroMel_CAF1
Location 1,582,209 – 1,582,302
Length 93
Max. P 0.776099
window820

overview

Window 0

Location 1,582,209 – 1,582,302
Length 93
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 96.06
Mean single sequence MFE -21.84
Consensus MFE -19.15
Energy contribution -18.96
Covariance contribution -0.19
Combinations/Pair 1.14
Mean z-score -1.52
Structure conservation index 0.88
SVM decision value 0.54
SVM RNA-class probability 0.776099
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1582209 93 - 22407834
GUGCGAAAUCGUUUCCAUUCCAAAAUAGCCAAAUGAUGUUUAAGUUGGAAUUCAAUUUGGAGGCGAUAGAACGAGGAGAAAGGUUUUCCAUCA
.......((((((((((((((((..(((.((.....)).)))..)))))).......)))))))))).....(((((((.....))))).)). ( -22.91)
>DroSec_CAF1 60699 93 - 1
GUGCGAAAUCGUUUCCAUUCCAAAAUAGCCAAAUGAUGUUUAAGUUGGAAUUCAAUUUGGAGGCGAUAGAACGAGGAGAAAGGUUUUCCAUCA
.......((((((((((((((((..(((.((.....)).)))..)))))).......)))))))))).....(((((((.....))))).)). ( -22.91)
>DroSim_CAF1 62993 93 - 1
GUGCGAAAUCGUUUCCAUUCCAAAAUAGCCAAAUGAUGUUUAAGUUGGAAUUCAAUUUGGAGGCGAUAGAACGAGGAGAAAGGUUUUCCAUCA
.......((((((((((((((((..(((.((.....)).)))..)))))).......)))))))))).....(((((((.....))))).)). ( -22.91)
>DroEre_CAF1 61917 93 - 1
GUGCGAAAUCGUUUCCAUUCCAAAAUAGCCAAAUGAUGUUUAAGUUGGAAUUCAAUUUGGAGGCGAUAGAACGAGGAGAAAGGUUUUCCAUCA
.......((((((((((((((((..(((.((.....)).)))..)))))).......)))))))))).....(((((((.....))))).)). ( -22.91)
>DroYak_CAF1 60884 93 - 1
GUGCGAAAUCGUUUCCAUUCCAAAAUAGCCAAAUGAUGUUUAAGUUGGAAUUCAAUUUGGAGGCGAUAGAACGAGGAGAAAGGUUUUCCAUCA
.......((((((((((((((((..(((.((.....)).)))..)))))).......)))))))))).....(((((((.....))))).)). ( -22.91)
>DroAna_CAF1 91545 93 - 1
GCGAGAAAUCGUUUCUAUUUGAAAAUAGCCAAAUGAUGUUUAAACUUGAAUUCAAUUUGAAGGUAAUAGAACGAGGAGAAAGGUUUUCCAUCA
((((....))))(((((((((........))))..((.((((((.(((....))))))))).))..))))).(((((((.....))))).)). ( -16.50)
>consensus
GUGCGAAAUCGUUUCCAUUCCAAAAUAGCCAAAUGAUGUUUAAGUUGGAAUUCAAUUUGGAGGCGAUAGAACGAGGAGAAAGGUUUUCCAUCA
.......((((((((((((((((..(((.((.....)).)))..)))))).......)))))))))).....(((((((.....))))).)). (-19.15 = -18.96 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:00 2006