Locus 5169

Sequence ID 2L_DroMel_CAF1
Location 14,635,476 – 14,635,579
Length 103
Max. P 0.930007
window8231

overview

Window 1

Location 14,635,476 – 14,635,579
Length 103
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 77.09
Mean single sequence MFE -28.73
Consensus MFE -14.36
Energy contribution -14.42
Covariance contribution 0.06
Combinations/Pair 1.07
Mean z-score -2.36
Structure conservation index 0.50
SVM decision value 1.20
SVM RNA-class probability 0.930007
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14635476 103 + 22407834
CAAAGC------CACCAAAU--CGCCAACCAUGAC--CAGCGUACUUCACU--CCCCCUACCAACAGCCACC---ACCCCACCUGGGUGGACAAGGCUGGCAAUUUGCUUUAUGGGAU
......------........--......((((((.--.(((((.....)).--...........(((((.((---((((.....))))))....))))).......)))))))))... ( -26.60)
>DroSec_CAF1 27116 103 + 1
CAAAGC------CACCAAGU--CGCCACCCAUGAC--CAGCGUACUUCACU--CCCCCUACCUAUAGUCCCC---ACCCCACCUGGGUGGACAAGGCUGGCAAUUUGCUUUAUGGGAU
......------........--.....((((((((--((((..........--....(((....)))...((---((((.....)))))).....))))).........))))))).. ( -26.00)
>DroSim_CAF1 17575 103 + 1
CAAAGC------CACCAAGU--CGCCACCCAUGAC--CAGCGUACUUCACU--CCCCCUACCUGCGGUCCCC---ACCCCACCUGGGUGGACAAGGCUGGCAAUUUGCUUUAUGGGAU
.....(------((.(((((--.((((.((..(((--(.(((.........--.........))))))).((---((((.....))))))....)).)))).))))).....)))... ( -30.47)
>DroEre_CAF1 17743 116 + 1
CAAAGCCCCCACCACCAAGU--GGACACCCAUGACUCCCAUGUACUCCCCCUAUCCCCUACCUCCAACACCCAAUACCCAACCUGGGUGGACAAGGCUGGCAAUUUGCUUUAUGGGAU
........((((......))--))...(((((((..........................(((....((((((..........))))))....)))..(((.....)))))))))).. ( -26.80)
>DroYak_CAF1 18671 102 + 1
CAAAGC------CACCAAGU--CGCCACCCAUGAC--CAGCGUACUCCCCCUA---CCUACCUCCAGCCCCC---ACCCAAGCUGGGUGGACAAGGCUGGCAAUUUGCUUUAUGGGAU
......------........--.....(((((((.--.((((((.......))---)......((((((.((---((((.....))))))....))))))......)))))))))).. ( -33.20)
>DroAna_CAF1 16038 86 + 1
CACUCC------CCCCAACACACACCGCCCAUGUC--AAGCCUG---------CCCCCUACCG---------------CCCCCUGGGCGGACAAGGCUGGCAAUUUGCUUUAUGGGAU
......------...............((((((..--((((.((---------((.(((.(((---------------(((...))))))...)))..))))....)))))))))).. ( -29.30)
>consensus
CAAAGC______CACCAAGU__CGCCACCCAUGAC__CAGCGUACUUCACU__CCCCCUACCUACAGCCCCC___ACCCCACCUGGGUGGACAAGGCUGGCAAUUUGCUUUAUGGGAU
..............(((.......(((((((....................................................)))))))..(((((.........))))).)))... (-14.36 = -14.42 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:44 2006