Locus 5167

Sequence ID 2L_DroMel_CAF1
Location 14,628,997 – 14,629,087
Length 90
Max. P 0.929340
window8227

overview

Window 7

Location 14,628,997 – 14,629,087
Length 90
Sequences 5
Columns 90
Reading direction forward
Mean pairwise identity 100.00
Mean single sequence MFE -29.90
Consensus MFE -29.90
Energy contribution -29.90
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.62
Structure conservation index 1.00
SVM decision value 1.20
SVM RNA-class probability 0.929340
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14628997 90 + 22407834
GUCGCGAGCGGAAAUCGUUCACUAGUAGUUAUUUUCUUUUAUGGGGGAAUGGGCUAACUGCCGGCGACUGGGAGAGCGGCAAUUGGCUUA
((((((((((.....))))).(((((.((((((..(((....)))..))))(((.....))).)).)))))....))))).......... ( -29.90)
>DroSec_CAF1 11195 90 + 1
GUCGCGAGCGGAAAUCGUUCACUAGUAGUUAUUUUCUUUUAUGGGGGAAUGGGCUAACUGCCGGCGACUGGGAGAGCGGCAAUUGGCUUA
((((((((((.....))))).(((((.((((((..(((....)))..))))(((.....))).)).)))))....))))).......... ( -29.90)
>DroSim_CAF1 11078 90 + 1
GUCGCGAGCGGAAAUCGUUCACUAGUAGUUAUUUUCUUUUAUGGGGGAAUGGGCUAACUGCCGGCGACUGGGAGAGCGGCAAUUGGCUUA
((((((((((.....))))).(((((.((((((..(((....)))..))))(((.....))).)).)))))....))))).......... ( -29.90)
>DroEre_CAF1 11072 90 + 1
GUCGCGAGCGGAAAUCGUUCACUAGUAGUUAUUUUCUUUUAUGGGGGAAUGGGCUAACUGCCGGCGACUGGGAGAGCGGCAAUUGGCUUA
((((((((((.....))))).(((((.((((((..(((....)))..))))(((.....))).)).)))))....))))).......... ( -29.90)
>DroYak_CAF1 11864 90 + 1
GUCGCGAGCGGAAAUCGUUCACUAGUAGUUAUUUUCUUUUAUGGGGGAAUGGGCUAACUGCCGGCGACUGGGAGAGCGGCAAUUGGCUUA
((((((((((.....))))).(((((.((((((..(((....)))..))))(((.....))).)).)))))....))))).......... ( -29.90)
>consensus
GUCGCGAGCGGAAAUCGUUCACUAGUAGUUAUUUUCUUUUAUGGGGGAAUGGGCUAACUGCCGGCGACUGGGAGAGCGGCAAUUGGCUUA
((((((((((.....))))).(((((.((((((..(((....)))..))))(((.....))).)).)))))....))))).......... (-29.90 = -29.90 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:40 2006