Locus 5164

Sequence ID 2L_DroMel_CAF1
Location 14,625,209 – 14,625,299
Length 90
Max. P 0.592756
window8222

overview

Window 2

Location 14,625,209 – 14,625,299
Length 90
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 81.03
Mean single sequence MFE -17.80
Consensus MFE -10.07
Energy contribution -10.93
Covariance contribution 0.86
Combinations/Pair 1.27
Mean z-score -2.00
Structure conservation index 0.57
SVM decision value 0.12
SVM RNA-class probability 0.592756
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14625209 90 - 22407834
--UAG-------UUCCGCGCUCCCCU-------CGAAUGCAUUUCAUUUAUGCAUUUUUCGAGUCUUGCAACCAAAGUCACUUUUGGAGUUUGUUCACCCAUCCAC
--...-------......((....((-------(((((((((.......))))))...)))))....))..((((((....))))))................... ( -17.70)
>DroSec_CAF1 7448 93 - 1
--UAG-------UUCCGCGCUCCCCUC----GUCGAAUGCAUUUCAUUUAUGCAUUUUUCGACUCUUGCAACCAAAGUCACUUUUGGAGUUUGUUCACCCAUCCAC
--...-------...((.(((((....----(..((((((((.......))))))))..)((((.(((....)))))))......))))).))............. ( -18.80)
>DroSim_CAF1 7098 93 - 1
--UAG-------UUCCGCGCUCCCCUC----GUCGAAUGCAUUUCAUUUAUGCAUUUUUCGACUCUUGCAACCAAAGUCACUUUUGGAGUUUGUUCACCCAUCCAC
--...-------...((.(((((....----(..((((((((.......))))))))..)((((.(((....)))))))......))))).))............. ( -18.80)
>DroEre_CAF1 7368 89 - 1
--CGG-------UUCCGCGCUC-------CCCUCAAAUGCAUUUCAUUUAUGCAUUU-UCCACUCUUGCAACCAAAGUCACUUUUGGAGUUUGUUCACCCAUCCAC
--.((-------(..((.((((-------(....((((((((.......))))))))-...(((.(((....)))))).......))))).))...)))....... ( -15.60)
>DroYak_CAF1 7472 96 - 1
--UGG-------UUCCCCGCUCCCCUCUCCCCUCGAAUGCAUUUCAUUUAUGCAUUU-UCCACUCUUGCAACCAAAGUCACUUUUGGAGUUUGUUCACCCAUCCAC
--.((-------(.....(((((...........((((((((.......))))))))-...(((.(((....)))))).......)))))......)))....... ( -14.50)
>DroAna_CAF1 6706 93 - 1
CAUAUGUGUACACUGCACACCCCCCU-------CGGCCG-AUGGCAUAUAUGCACUU-UCGGGUCUUGCAACCGAA-UCACUCUCGGAGUUUGUUCACCCA---AC
(((((((((...(.((..........-------..)).)-...))))))))).....-..((((...((((((((.-......))))...))))..)))).---.. ( -21.40)
>consensus
__UAG_______UUCCGCGCUCCCCU______UCGAAUGCAUUUCAUUUAUGCAUUU_UCGACUCUUGCAACCAAAGUCACUUUUGGAGUUUGUUCACCCAUCCAC
...............((.(((((...........((((((((.......))))))))...((((.(((....)))))))......))))).))............. (-10.07 = -10.93 +   0.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:36 2006