| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,624,324 – 14,624,415 |
| Length | 91 |
| Max. P | 0.999984 |
| Location | 14,624,324 – 14,624,415 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 68.15 |
| Mean single sequence MFE | -14.87 |
| Consensus MFE | -9.99 |
| Energy contribution | -10.00 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.67 |
| SVM decision value | 5.34 |
| SVM RNA-class probability | 0.999984 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14624324 91 + 22407834 CAACCAAAAAUGUUUCUGAAAAUUAGCUUUUAGGAUUAAGUUACUUAACUUCAUUAGGUAACUUCAUCAA-------AAACA-AAAUAUAUCAACACAC ..........(((((((((((......))))))(((.(((((((((((.....))))))))))).)))..-------)))))-................ ( -17.20) >DroSec_CAF1 6559 99 + 1 CAACCAAAAAUGUUUCUGAAAAUUAGCUUUUAGGAUUGAGUUACCUAACUCCAUUAGGUAACUUCAUAAGGUCACUUAAUCACAAAUAUAUCUACACAA ..(((........((((((((......))))))))..(((((((((((.....))))))))))).....)))........................... ( -19.00) >DroYak_CAF1 6716 83 + 1 CACUCAAAAAGGUUUCUAUGACAUAACUUUUAGGAUUUUGUUAUUU-------UCGAGUUACUUCUAAAUGU-------ACAAGAAUAUAU-UACAAA- ...((..(((((((..........)))))))..))(((((((((((-------..(((...)))..))))).-------))))))......-......- ( -8.40) >consensus CAACCAAAAAUGUUUCUGAAAAUUAGCUUUUAGGAUUAAGUUACUUAACU_CAUUAGGUAACUUCAUAAAGU_____AAACA_AAAUAUAUCUACACA_ .............((((((((......))))))))....(((((((((.....)))))))))..................................... ( -9.99 = -10.00 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:35 2006