Locus 5161

Sequence ID 2L_DroMel_CAF1
Location 14,622,761 – 14,622,866
Length 105
Max. P 0.992240
window8219

overview

Window 9

Location 14,622,761 – 14,622,866
Length 105
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 91.92
Mean single sequence MFE -41.52
Consensus MFE -35.46
Energy contribution -35.70
Covariance contribution 0.24
Combinations/Pair 1.03
Mean z-score -2.12
Structure conservation index 0.85
SVM decision value 2.32
SVM RNA-class probability 0.992240
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14622761 105 - 22407834
ACCCAGUUCCUCGACUUUGCCUCCCAAAGGGA--GAAGGGAGCUCAAGCUUGAGCUCGGGC----GCUCG-------AAUGCAAUUCCCCCGACAACUCGGCAGAGAGUUGAGAACCC
.....((((.((((((((..(((((...))))--)..((((((((.(((....))).))))----((...-------...))...))))((((....))))...)))))))))))).. ( -39.20)
>DroSec_CAF1 4957 105 - 1
ACCCAGUUCCUCGACUUGGCCUCCCAAAGGGA--GAAGGGAGCUCAAGUUUGAGCUCGGGC----GCUCG-------AAUGCAAUUCCCCCGACAACUCGGCAGAGAGUUGAGAACCC
.....((((.(((((((.(((((((...))))--(..(((((((((....)))))))(((.----((...-------...))....)))))..).....)))...))))))))))).. ( -39.30)
>DroSim_CAF1 4968 105 - 1
ACCCAGUUCCUCGACUUGGCCUCCCAAAGGGA--GAAGGGAGCUCAAGUUUGAGCUCGGGC----GCUCG-------AAUGCAAUUCCCCCGACAACUCGGCAGAGAGUUGAGAACCC
.....((((.(((((((.(((((((...))))--(..(((((((((....)))))))(((.----((...-------...))....)))))..).....)))...))))))))))).. ( -39.30)
>DroEre_CAF1 5066 116 - 1
ACCCAGUUCCUCGACUUGGCCUCCCAAAGGGA--GAAGGGAGCUCAAGUUCGAGCUCGGGCUCGGGCUCGGUCUCGCAAUGCAAUUCCCCCGACAACUCGGCAGAUAGUUGAGAACCC
.....((((.((((((..(((((((...))))--)..(.(((..(.(((((((((....))))))))).)..))).)...))...((..((((....))))..)).)))))))))).. ( -42.50)
>DroYak_CAF1 5144 111 - 1
ACCCAGUUCCUCAACUUGGCCUCCCAAAGGGAGAGAAGGGAGCUCAAGUUCGAGCUCGGUCUCGGGCUCG-------AAUGCAAUUCCCCCGACAACUCGGCAGGGAGUUGAGAACCC
.((.((((....)))).)).(((((...)))))....(((..(((..(((((((((((....))))))))-------)))..(((((((((((....))))..))))))))))..))) ( -47.30)
>consensus
ACCCAGUUCCUCGACUUGGCCUCCCAAAGGGA__GAAGGGAGCUCAAGUUUGAGCUCGGGC____GCUCG_______AAUGCAAUUCCCCCGACAACUCGGCAGAGAGUUGAGAACCC
.....((((.(((((((.(((((((...))))..(..((((((((......))))))((((....))))....................))..).....)))...))))))))))).. (-35.46 = -35.70 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:33 2006