Locus 5160

Sequence ID 2L_DroMel_CAF1
Location 14,622,031 – 14,622,124
Length 93
Max. P 0.702036
window8218

overview

Window 8

Location 14,622,031 – 14,622,124
Length 93
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 87.31
Mean single sequence MFE -29.13
Consensus MFE -23.93
Energy contribution -24.65
Covariance contribution 0.72
Combinations/Pair 1.15
Mean z-score -2.03
Structure conservation index 0.82
SVM decision value 0.35
SVM RNA-class probability 0.702036
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14622031 93 - 22407834
AGGGUGACCCUCUGGAUCAGAAACGAGAUCGAGAGCAGCGAGAUCUGUAUCAUUCGGAGUGUCAAUGGACGCAAAUUUACAAAAUGUUUGCUG
.((....))((((.((((........)))).))))(((((((.((((.......))))(((((....)))))..............))))))) ( -29.50)
>DroSec_CAF1 4222 93 - 1
AGGGUGACCCUCUGGAUCAGAACGGAGAUCGAGAGCAGCGAGAUCUGUAUCAUUCGGAGUGUCAAUGGACGCAAAUUUACAAAAUGUUUGCUG
.((....))((((.((((........)))).))))(((((((.((((.......))))(((((....)))))..............))))))) ( -29.50)
>DroSim_CAF1 4233 93 - 1
AGGGUGACCCUCUGGAUCAGAACGGAGAUCGAGAGCAGCGAGAUCUGUAUCAUUCGGAGUGUCAAUGGACGCAAAUUUACAAAAUGUUUGCUG
.((....))((((.((((........)))).))))(((((((.((((.......))))(((((....)))))..............))))))) ( -29.50)
>DroEre_CAF1 4333 93 - 1
AGGGUGACCCUCUGGAUCAGAGCCGAGAUCGAGAGCAGUGAGAUCUGUAUCAUUCAGAGUGUCAAUGGACGCAAAUUUACAAAACGCUUGCUG
.((....))((((.((((........)))).))))(((..((.((((.......))))(((((....)))))..............))..))) ( -30.30)
>DroYak_CAF1 4409 93 - 1
AGGGUGACCCUCUGGAUCAGAACCCAGAUCGAGAGCUGUGAGAUCUGUAUCGGUCAGAGUGUCAAUGGACGCAAAUUUACAAAAUGCUUGCUG
.((....))((((.((((........)))).))))..(..((.((((.......))))(((((....)))))..............))..).. ( -27.10)
>DroAna_CAF1 4011 91 - 1
CGGGUGACCCUAC--ACCCAGCUGCGGAUCAAGAGCAGCGAGAUGUGUAUCGCGAAAAGUGUCAAUGGACGCAAAUUUACAAAAUGUGCUCUG
.(((((......)--))))............((((((((((........)))).....(((((....)))))..............)))))). ( -28.90)
>consensus
AGGGUGACCCUCUGGAUCAGAACCGAGAUCGAGAGCAGCGAGAUCUGUAUCAUUCAGAGUGUCAAUGGACGCAAAUUUACAAAAUGUUUGCUG
.((....))((((.((((........)))).))))(((((((.((((.......))))(((((....)))))..............))))))) (-23.93 = -24.65 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:32 2006