Locus 516

Sequence ID 2L_DroMel_CAF1
Location 1,581,494 – 1,581,584
Length 90
Max. P 0.999470
window819

overview

Window 9

Location 1,581,494 – 1,581,584
Length 90
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 88.63
Mean single sequence MFE -18.08
Consensus MFE -16.66
Energy contribution -16.68
Covariance contribution 0.03
Combinations/Pair 1.06
Mean z-score -3.73
Structure conservation index 0.92
SVM decision value 3.63
SVM RNA-class probability 0.999470
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1581494 90 + 22407834
CACCCA---AAAAAAGAAAAAUAAAUAUCAGCGUCAACAGCAAAAAAUGCUAAUUCAAAACAAGCAGAUUUUGCGGUUUAUGCAA-------AUGCCUCU
......---.....................((((.(((.((((((..((((...........))))..)))))).))).))))..-------........ ( -17.30)
>DroSec_CAF1 59995 89 + 1
CACCCA---AA-AAAGAAAAAUAAACAUCAGCGUCAACAGCAAAAAAUGCUAAUUCAAAACAAGCAGAUUUUGCGGUUUAUGCAA-------AUGCCUCU
......---..-.............(((..((((.(((.((((((..((((...........))))..)))))).))).))))..-------)))..... ( -17.90)
>DroSim_CAF1 62289 89 + 1
CACCCA---AA-AAAGAAAAAUAAACAUCAGCGUCAACAGCAAAAAAUGCUAAUUCAAAACAAGCAGAUUUUGCGGUUUAUGCAA-------AUGCAUCU
......---..-.............(((..((((.(((.((((((..((((...........))))..)))))).))).))))..-------)))..... ( -17.90)
>DroEre_CAF1 61188 88 + 1
CACCC----AA-AAGGAAAAAUAAACAUCAGCGUCAACAGCAAAAAAUGCUAAUUCAAAACAAGCAGAUUUUGCGGUUUAUGCAA-------AUGCCUCU
...((----..-..)).........(((..((((.(((.((((((..((((...........))))..)))))).))).))))..-------)))..... ( -18.50)
>DroYak_CAF1 60152 99 + 1
CACCCGAAAAA-AAAGAAAAAUAAACAUCAGCGUCAACAGCAAAAAAUGCUAAUUCAAAACAAGCAGAUUUUGCGGUUUAUGCAAAUGGCAAAUGCCUCU
...........-..(((.............((((.(((.((((((..((((...........))))..)))))).))).))))....(((....)))))) ( -21.50)
>DroAna_CAF1 90652 89 + 1
AAAAAA---AU-AACAAAAAAUUUACUUGAGCAUCAACAACAAAAAAUGCUAAUUCAAAACAAGCAGAUUUUGCGGUUUAUGCAA-------AUGUCCCA
......---..-..................((((.(((..(((((..((((...........))))..)))))..))).))))..-------........ ( -15.40)
>consensus
CACCCA___AA_AAAGAAAAAUAAACAUCAGCGUCAACAGCAAAAAAUGCUAAUUCAAAACAAGCAGAUUUUGCGGUUUAUGCAA_______AUGCCUCU
..............................((((.(((.((((((..((((...........))))..)))))).))).))))................. (-16.66 = -16.68 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:59 2006