Locus 5158

Sequence ID 2L_DroMel_CAF1
Location 14,619,849 – 14,619,957
Length 108
Max. P 0.958957
window8215

overview

Window 5

Location 14,619,849 – 14,619,957
Length 108
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 75.60
Mean single sequence MFE -31.08
Consensus MFE -24.09
Energy contribution -24.53
Covariance contribution 0.44
Combinations/Pair 1.22
Mean z-score -1.67
Structure conservation index 0.78
SVM decision value 1.50
SVM RNA-class probability 0.958957
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14619849 108 + 22407834
AAGUAGUAUACAUUUUCUACUUCCAAUCUUGCCUUGGC------UUUUUCUCAUCGUGUAGCUAUAUCUCAGCUAUAUGGUGGGGUGAGUUGUGGGCACGCCGCCUUGGCAUAC
((((((..........)))))).......((((..(((------......(((((((((((((.......)))))))))))))((((.((.....)).)))))))..))))... ( -37.70)
>DroSec_CAF1 2001 95 + 1
AAGAAGUC-------------UCCAAUCUUGCCUUGGC------UUUUUCUCAGGGUGUAUCUAUAUCUCAGCUAUAUGGUGGGGUGAGUUGUGGGCACGCCGCCUUGGCAUAC
........-------------........((((..(((------..........(((((..(((((.((((.((........)).)))).)))))..))))))))..))))... ( -30.50)
>DroSim_CAF1 1998 108 + 1
AAAAAGUAUACAUCUUCUACUUCCAAUCUUGCCUUGGU------UUUUUCUCAGGGUGUAUCUAUAUCUCAGCUAUAUGGUGGGGUGAGUUGUGGGCACGCCGCCUUGGCAUAC
...(((((.........))))).......((((..(((------..........(((((..(((((.((((.((........)).)))).)))))..))))))))..))))... ( -29.40)
>DroEre_CAF1 2052 101 + 1
U-------------AUCUACUUCUGCUAUUGUCUGGGUUUCUUCUUUUUCUCAGGGUGUAGCCAUAUACCAGCUAUAUGGUGGGGUGAGUUGUGGCCACGCCGCCUUGGCAUAC
.-------------.........(((((..(((((((............)))))(((((.((((((((((.(((....)))..))))...)))))).)))))))..)))))... ( -31.40)
>DroYak_CAF1 2114 90 + 1
A-------------AUCUACCUCU------GUCUGGGU-----CAGUUUCUCACGGUGUAGCUAUAUACCAGCCAUACAGUGGGGUGAGUUGUGGGCACGCCGCCUUGGCAUAC
.-------------.....((.((------((.(((..-----..((.....))((((((....))))))..))).)))).))((((.((.....)).))))((....)).... ( -26.40)
>consensus
AA__AGU_______AUCUACUUCCAAUCUUGCCUUGGU______UUUUUCUCAGGGUGUAGCUAUAUCUCAGCUAUAUGGUGGGGUGAGUUGUGGGCACGCCGCCUUGGCAUAC
..............................(((..(((................(((((.((((((.((((.((........)).)))).)))))).))))))))..))).... (-24.09 = -24.53 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:29 2006