Locus 5156

Sequence ID 2L_DroMel_CAF1
Location 14,614,266 – 14,614,357
Length 91
Max. P 0.517803
window8212

overview

Window 2

Location 14,614,266 – 14,614,357
Length 91
Sequences 4
Columns 111
Reading direction reverse
Mean pairwise identity 74.04
Mean single sequence MFE -21.40
Consensus MFE -10.58
Energy contribution -11.39
Covariance contribution 0.81
Combinations/Pair 1.07
Mean z-score -1.94
Structure conservation index 0.49
SVM decision value -0.03
SVM RNA-class probability 0.517803
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14614266 91 - 22407834
UGUGU----------GUGUGCACACAAGUUCUAUCACCUAAUUGGAAAAUACAUUUGCUAAAGUAUAAACAUGUAU------UUCGGGUCAUA----UAUGGCCCAGUUCU
(((((----------(....))))))..........((.....)).((((((((.(((....))).....))))))------)).((((((..----..))))))...... ( -22.70)
>DroSec_CAF1 22622 97 - 1
UGUGU----------GUAUGCACACAAGUUCUUUAACCUAAUUGGAAAAUAUAUUUGCUAAAAUAUACAUAUUUAUACAGAUACCGGGUCAUA----UAUGGCCCAAUUCU
(((((----------(....))))))...(((.((.((.....))....(((((((....)))))))........)).)))....((((((..----..))))))...... ( -21.40)
>DroSim_CAF1 27965 101 - 1
UGUGU----------GUAUGCACACAAGUUCUUUAACCUAAUUGGAAAAUAUAUUUGCUAAAAUAUACAUAUUUAUACAGAUAUCGGGUCAUAUGUAUAUGGCCCAAUUCU
(((((----------(....))))))..........((.....)).....(((((((...(((((....)))))...))))))).((((((((....))))))))...... ( -24.20)
>DroYak_CAF1 22951 98 - 1
UAUGUAUUUAUUUAUGUGAGCACACGAAUUGUUGCACCUAAUUGGAAAAUAUAUGGGCUAAAAUCU--------AUACAGAUAUCAGGUCUU-----UGUGGCCAAGUACU
..((((...(((..(((....)))..)))...)))).....((((....((((.(((((...((((--------....))))....))))).-----)))).))))..... ( -17.30)
>consensus
UGUGU__________GUAUGCACACAAGUUCUUUAACCUAAUUGGAAAAUAUAUUUGCUAAAAUAUACAUAUUUAUACAGAUAUCGGGUCAUA____UAUGGCCCAAUUCU
(((((..............)))))............((.....))........................................((((((((....))))))))...... (-10.58 = -11.39 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:27 2006