| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,613,408 – 14,613,526 |
| Length | 118 |
| Max. P | 0.659725 |
| Location | 14,613,408 – 14,613,526 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.70 |
| Mean single sequence MFE | -40.52 |
| Consensus MFE | -27.95 |
| Energy contribution | -27.20 |
| Covariance contribution | -0.75 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.659725 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14613408 118 - 22407834 CAGUGGACAGUGUGCGCCUUAUCGGCUUGGCCCCCAAG--UCAUGCCGCCGGUGACAUUCAACCUCUGGGGGGGUAAUGACGCCAGCGGCGUACCUGCCAAAACCGAUUUACACCAGCUC ...(((.(((.(((((((.....(((.((((......)--))).)))((.((((.((((..(((((....))))))))).)))).))))))))))))))).................... ( -47.20) >DroPse_CAF1 28590 94 - 1 -------AAGUG----------UGGCAUGGCCCCCGGGGUCCACGCUGCCGGUGACAUUCAACCUCUGGG-GGGUAAUGACGCCAACAGCGUACCUGUCAAAACCGAUUUAU-------- -------.....----------(((((.(((((...))))).((((((..((((.((((..((((.....-)))))))).))))..))))))...)))))............-------- ( -31.60) >DroEre_CAF1 19764 117 - 1 CAGUGGAAAGUGUGCGCCUUAUCGGCUUGGCCCCCAAG--UCAUGCUGCCGGUGACAUUCAACCUCUGGG-GGGUAAUGACGCCAGCGGCGUACCUGCCAAAACCGAUUUGCACCAGCUG ((((.....(.(((((....(((((.(((((.....((--..(((((((.((((.((((..((((.....-)))))))).)))).)))))))..)))))))..))))).)))))).)))) ( -43.30) >DroYak_CAF1 22053 117 - 1 CAGCGGACAGUGUGCGCCUUAUCGGCUUGGCCCCCAAG--UCAUGCCGCCGGUGACAUUCAACCUCUGGG-GGGUAAUGACGCCAGCGGCGUACCUGCCACAACCGAUUUACACCAGCUC .(((((.(((.(((((((.....(((.((((......)--))).)))((.((((.((((..((((.....-)))))))).)))).))))))))))))))......(........).))). ( -45.60) >DroAna_CAF1 12338 115 - 1 --GUGGGCAGUGCUCGCCUUAUCGGUUUGGCCCCCAAG--GCUCGCUGUCGGUGACAUUCAACCUCCCGG-GGGUAAUGACGCCAACAGCGUACCUGUCAGAACCGAUUUACACUGGGUC --((((((.......)))..(((((((((((.....((--(..((((((.((((.((((..((((.....-)))))))).)))).))))))..)))))))).))))))...)))...... ( -43.80) >DroPer_CAF1 28678 94 - 1 -------AAGUG----------UGGCAUGGCCCCCGGGGUCCACGCUGCCGGUGACAUUCAACCUCUGGG-GGGUAAUGACGCCAACAGCGUACCUGUCAAAACCGAUUUAU-------- -------.....----------(((((.(((((...))))).((((((..((((.((((..((((.....-)))))))).))))..))))))...)))))............-------- ( -31.60) >consensus __GUGGAAAGUGUGCGCCUUAUCGGCUUGGCCCCCAAG__UCACGCUGCCGGUGACAUUCAACCUCUGGG_GGGUAAUGACGCCAACAGCGUACCUGCCAAAACCGAUUUACACCAGCUC .....................((((..((((.....((....(((((((.((((.((((..((((......)))))))).)))).)))))))..))))))...))))............. (-27.95 = -27.20 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:26 2006