Locus 5154

Sequence ID 2L_DroMel_CAF1
Location 14,607,444 – 14,607,544
Length 100
Max. P 0.579717
window8210

overview

Window 0

Location 14,607,444 – 14,607,544
Length 100
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 80.54
Mean single sequence MFE -22.18
Consensus MFE -14.74
Energy contribution -15.43
Covariance contribution 0.69
Combinations/Pair 1.04
Mean z-score -1.39
Structure conservation index 0.66
SVM decision value 0.09
SVM RNA-class probability 0.579717
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14607444 100 - 22407834
UCUGGAGUUUUUUUGCAGGAAGC-CCGUCCAUGAUUGAGUGGGUUGUUCUGAGUGCGCUUAAUUGUGGCCAUAAUUAAUCAAAUGC-UGUUAAUUAAAGAAA
(((((.((((((.....))))))-))(.(((..((((((((.(((......))).))))))))..))).).((((((((.......-.)))))))).))).. ( -23.80)
>DroPse_CAF1 20980 77 - 1
-------------------------AGGGCAUGAUUGAGUGGGUUGUUCUGAGUGCGCUUAAUUGUGGCCAUAAUUAAUCAAAUGUUUGUUAAUUAAAGAAA
-------------------------.((.((..((((((((.(((......))).))))))))..)).)).(((((((.(((....))))))))))...... ( -20.90)
>DroEre_CAF1 13690 99 - 1
UCGGGAGUUA-UUUGCAGGAAGCCC-GUCCAUGAUUGAGUGGGUUGUUCUGAGUGCGCGUAAUUGUGGCCAUAAUUAAUCAAAUGC-UGUUAAUUAAAGAAA
..((......-....((((((((((-(..((....))..)))))).)))))....((((....)))).)).((((((((.......-.))))))))...... ( -22.00)
>DroYak_CAF1 15998 100 - 1
UCAGGAGUUA-UUUGCAGGAAGCCCAGGCCAUGAUUGAGUGGGUUGUUCUGAGUGCGCUUAAUUGUGGCCAUAAUUAAUCAAAUGC-UGUUAAUUAAAGAAG
((...(((((-...(((((....)).(((((..((((((((.(((......))).))))))))..))))).............)))-...)))))...)).. ( -29.00)
>DroAna_CAF1 6806 99 - 1
UCACGAGUUA-UUUGCAGGAAGC-UAGACCAUGAUUGAGUGGGCUGUUCUGAGUGCGCUUAAUUGAGGCCAUAAUUAAUCAAAUUC-UGUUAAUUAAAGAAU
..........-...((.....))-..(.((.((((((((((.(((......))).)))))))))).)).).((((((((.......-.))))))))...... ( -19.20)
>DroPer_CAF1 20913 77 - 1
-------------------------AGGGCAUGAUUGAGUGGGUUGUUCUGAGUGCGCUUAAUUGUUGCCAUAAUUAAUCAAAUGUUUGUUAAUUAAAGAAA
-------------------------..((((..((((((((.(((......))).))))))))..).))).(((((((.(((....))))))))))...... ( -18.20)
>consensus
UC_GGAGUUA_UUUGCAGGAAGC_CAGGCCAUGAUUGAGUGGGUUGUUCUGAGUGCGCUUAAUUGUGGCCAUAAUUAAUCAAAUGC_UGUUAAUUAAAGAAA
..........................(.(((((((((((((.(((......))).))))))))))))).).(((((((.((......)))))))))...... (-14.74 = -15.43 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:24 2006