Locus 5151

Sequence ID 2L_DroMel_CAF1
Location 14,602,244 – 14,602,348
Length 104
Max. P 0.969941
window8205

overview

Window 5

Location 14,602,244 – 14,602,348
Length 104
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 73.73
Mean single sequence MFE -24.55
Consensus MFE -14.92
Energy contribution -15.25
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.98
Structure conservation index 0.61
SVM decision value 1.65
SVM RNA-class probability 0.969941
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14602244 104 - 22407834
UGCCCUGGCCGAGGAAACUCAGGUACAGCUCAUAGCCCGCCAAUCCACCUUUGUUUGGAUUCUUA--AC---UUCUUUGGAUUUAUUUACUACAUUUACAGGCCACUUU
.....((((((((....))).(((...((.....))..)))((((((.....(((.((...)).)--))---.....)))))).................))))).... ( -24.60)
>DroPse_CAF1 14817 99 - 1
CGCUUUGGCAGAGGAAACUCAGGUGGGAAACACAGCCACA-------CU--U-UUGAGAGUCCAAGUACCUAAUCUUGGAUUGGUUUUCCUCCAUUUCCAGGCAACCCU
.((((.((..(((....))).((.(((((((.(((.....-------..--.-)))..((((((((........)))))))).))))))).))....))))))...... ( -32.70)
>DroSec_CAF1 10723 103 - 1
UGCCCUGGCCGAGGAAACUCAGGUACAGCUCAUAGCCCACCAAUCCACCUUU-AUUGGAUUCUUA--AC---UUCUUUGGAUUUAUUUACUACAUUUACAGGCCACUUU
.....((((((((....))).(((...((.....))..)))((((((.....-..))))))....--..---............................))))).... ( -23.30)
>DroSim_CAF1 11014 103 - 1
UGCCCUGGCCGAGGAAACUCAGGUACAGCUCAUAGCCCACCAAUCCACCUUU-UUUGGAUUUUUA--AC---UUCUUUGGAUUUAUUUACUACAUUUACAGGCCACUUU
.....((((((((....))).(((...((.....))..)))((((((.....-..))))))....--..---............................))))).... ( -23.30)
>DroEre_CAF1 8562 101 - 1
CGCCCUGGCCGAGGAAACUCAGGUAAAACUCAUAGCCAGACAACCCCCCU-C-A-UGGUUUCUUA--AC---AUCUUUGGACACUUCUUCUUCGCCUUUAGGCCACGUU
.....((((((((....)))((((.............(((.((((.....-.-.-.)))))))..--.(---(....))..............))))...))))).... ( -22.00)
>DroYak_CAF1 10869 102 - 1
UGCCCUGGCCGAGGAAACUCAGGUAAAACUCAUAGCCAGACAGCCCCCUU-U-AGUGGUUUCUUU--AC---AUAUUUCGAUACUUUUACUGCAUUUAUAGGCCACUUU
.....((((((((....))).(((((((.((...((......))......-.-.((((.....))--))---.......))...))))))).........))))).... ( -21.40)
>consensus
UGCCCUGGCCGAGGAAACUCAGGUACAACUCAUAGCCAGACAAUCCACCU_U_AUUGGAUUCUUA__AC___AUCUUUGGAUUUAUUUACUACAUUUACAGGCCACUUU
.....((((((((....))).(((..........)))...............................................................))))).... (-14.92 = -15.25 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:19 2006