Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,580,807 – 1,580,901 |
Length | 94 |
Max. P | 0.605842 |
Location | 1,580,807 – 1,580,901 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 85.98 |
Mean single sequence MFE | -24.68 |
Consensus MFE | -20.86 |
Energy contribution | -21.50 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.15 |
Mean z-score | -1.62 |
Structure conservation index | 0.85 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.605842 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1580807 94 - 22407834 CAGCUCUUGGCAUUGUUUGUCUGACAGUUGUAAAGUGAUUUGCUACGUGAAUUGGGCGAUGCCGUUGGGAUCUGGGGAAAAUGGGUUAUUUCUG (((.((((((((((((..(..(.((.((.(((((....))))).)))).)..)..)))))))))...))).))).(((((........))))). ( -27.50) >DroSec_CAF1 59309 94 - 1 CAGCUCUUGGCAUUGUUUGUCUGACAGUUGUAAAGUGAUUUGCUACGUGAAUUGGGCGAUGCCAUUGGGAUCUGGGGAAAAUGGGUUAUUUCUG (((.((((((((((((..(..(.((.((.(((((....))))).)))).)..)..)))))))))...))).))).(((((........))))). ( -28.20) >DroSim_CAF1 61603 94 - 1 CAGCUCUUGGCAUUGUUUGUCUGACAGUUGUAAAGUGAUUUGCUACGUGAAUUGGGCGAUGCCAUUGGGAUCUGGGGAAAAUGGGUUAUUUCUG (((.((((((((((((..(..(.((.((.(((((....))))).)))).)..)..)))))))))...))).))).(((((........))))). ( -28.20) >DroEre_CAF1 60521 90 - 1 CAGCUUUUGGCAUUGUUUGUCUGACAGUUGUAAAGUGAUUUGCUACGUGAAUUGGGCGAUGCCGUUGGGAUCUGGCUAAAAUGGGUUAUU---- ...((..(((((((((..(..(.((.((.(((((....))))).)))).)..)..)))))))))..))((((((.......))))))...---- ( -25.60) >DroWil_CAF1 94082 74 - 1 CGA-UUCUGGCAUUGUUUGUUUGACAGUUGUAAAGUGAUUUGCUACGUGAAUUG----AUGCUUUUAGGU----------GUGUCUUAU----- .((-(((..((..((((.....))))((.(((((....))))).)))))))))(----((((........----------)))))....----- ( -13.00) >DroYak_CAF1 59460 90 - 1 CAGCUUUUGGCAUUGUUUGUCUGACAGUUGUAAAGUGAUUUGCUACGUGAAUUGGGCGAUGCCGUUGGGAUCUGGGUAAAAUGGGUUAUU---- ...((..(((((((((..(..(.((.((.(((((....))))).)))).)..)..)))))))))..))((((((.......))))))...---- ( -25.60) >consensus CAGCUCUUGGCAUUGUUUGUCUGACAGUUGUAAAGUGAUUUGCUACGUGAAUUGGGCGAUGCCGUUGGGAUCUGGGGAAAAUGGGUUAUU____ (((.((((((((((((..(..(.((.((.(((((....))))).)))).)..)..)))))))))...))).))).................... (-20.86 = -21.50 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:58 2006