Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,600,242 – 14,600,334 |
Length | 92 |
Max. P | 0.967501 |
Location | 14,600,242 – 14,600,334 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 73.64 |
Mean single sequence MFE | -19.45 |
Consensus MFE | -14.08 |
Energy contribution | -13.67 |
Covariance contribution | -0.42 |
Combinations/Pair | 1.12 |
Mean z-score | -1.61 |
Structure conservation index | 0.72 |
SVM decision value | 1.61 |
SVM RNA-class probability | 0.967501 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14600242 92 - 22407834 UAACAACGACUGUUCACCCCCUUCCAAUGCAAAAAGUGGAAGGGACGUCGAGCAAUGGA---------AA-ACUAACCCCA--ACAAAUGUAACAACAGCAGCA----- ......((((.((.....((((((((.(......).)))))))))))))).((..(((.---------..-.......)))--.....(((....)))))....----- ( -20.00) >DroPse_CAF1 11474 100 - 1 UAGCCCCGACUGUUCACCCCCCUCCAAGGCAU--ACUGGAAGGGACGUCGAGCAAUGGACAACAAAUCAA-ACUAACCCCCCAACAUACAU------GGCAGCAAUGUU ..(((.....((((....(((.((((.(....--.))))).)))..(((.(....).)))..........-...........)))).....------)))......... ( -20.30) >DroSec_CAF1 8719 92 - 1 UAACAACGACUGUUCACCCCCUUCCAAUGCAAAAAGUGGAAGGGACGUCGAGCAAUGGA---------AA-ACUAACCCCC--ACAAAUGUAACAACAGCAGCA----- ......((((.((.....((((((((.(......).)))))))))))))).((..(((.---------..-........))--)....(((....)))))....----- ( -19.60) >DroSim_CAF1 9017 92 - 1 UAACAACGACUGUUCACCCCCUUCCAAUGCAAAAAGUGGAAGGGACGUCGAGCAAUGGA---------AA-ACUAACCCCC--ACAAAUGUAACAACAGCAGCA----- ......((((.((.....((((((((.(......).)))))))))))))).((..(((.---------..-........))--)....(((....)))))....----- ( -19.60) >DroMoj_CAF1 5152 87 - 1 UAACAACGACUGUUCGCCCCCCUCCGC--CAUUAGCUGGAAGGGACGCUGAGCAAUGGA---------AAAACUGAUCACA--AUA---AUACACACAACAAC------ ......(.(.(((((((.(((.(((((--.....)).))).)))..)).))))).).).---------.............--...---..............------ ( -16.90) >DroPer_CAF1 11396 100 - 1 UAGCCCCAACUGUUCACCCCCCUCCAAGGCAU--ACUGGAAGGGACGUCGAGCAAUGGACAACAAAUCAA-ACUAAUCCCCCAACAUACAU------GGCAGCAAUGUU ..(((.....((((....(((.((((.(....--.))))).)))..(((.(....).)))..........-...........)))).....------)))......... ( -20.30) >consensus UAACAACGACUGUUCACCCCCCUCCAAUGCAAAAACUGGAAGGGACGUCGAGCAAUGGA_________AA_ACUAACCCCC__ACAAAUAUAACAACAGCAGCA_____ ......(.(.(((((((.(((.((((..........)))).)))..)).))))).).)................................................... (-14.08 = -13.67 + -0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:17 2006