Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,599,635 – 14,599,745 |
Length | 110 |
Max. P | 0.546078 |
Location | 14,599,635 – 14,599,745 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 80.97 |
Mean single sequence MFE | -35.61 |
Consensus MFE | -26.68 |
Energy contribution | -26.85 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.00 |
Mean z-score | -1.17 |
Structure conservation index | 0.75 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.546078 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14599635 110 - 22407834 -GGGCUCGUCCGGGAUUUGAACCCGGGACCUCCCGCACCCUAAGCGGAAAUCAUACCCCUAGACCAACGAGCCAGUUGUCUUACGUUGGUCAAAAAGCUUACUCA--UAUCAC----- -(((....((((((.......))))))....)))......(((((((........))....((((((((((.(....).))..)))))))).....)))))....--......----- ( -32.40) >DroPse_CAF1 10805 114 - 1 -GGGCUCGUCCGGGAUUUGAACCCGGGACCUCCCGCACCCUAAGCGGAAAUCAUACCCCUAGACCAACGAGCCGGUUAACGUUCAGCCGUCCAAAAGCCUAUUUC--CGUUACCAGC- -.((((((((((((.......)))))......((((.......))))...................)))))))(((.((((.......((......)).......--)))))))...- ( -32.74) >DroWil_CAF1 158466 116 - 1 GGGGCUCGUCGGGGAUUUGAACCCGGGACCUCCCGCACCCUAAGCGGAAAUCAUACCCCUAGACCAACGAGCCAGUUGAUGUUGGCCUGGCAGGGUGUUCAUUUG--GCUCAUAGCCA ..((((.(((((((...(((..(((((....)))((.......))))...)))..))))..)))....(((((((.(((.....((((....))))..))).)))--))))..)))). ( -41.90) >DroYak_CAF1 8224 110 - 1 -GGGCUCGUCCGGGAUUUGAACCCGGGACCUCCCGCACCCUAAGCGGAAAUCAUACCCCUAGACCAACGAGCCAGUUGCCCGAUGACGGUCAAAAUGCCUAGUCA--UCUUUC----- -.((((((((((((.......)))))......((((.......))))...................)))))))........(((((((((......)))..))))--))....----- ( -37.10) >DroMoj_CAF1 4438 112 - 1 -GGGCUCGUCCGGGAUUUGAACCCGGGACCUCCCGCACCCUAAGCGGAAAUCAUACCCCUAGACCAACGAGCCAGUUGAAGCGAUCUCGCCAAAGACGCUAUUUGAGUAUGAC----- -.((((((((((((.......)))))......((((.......))))...................)))))))......((((.(((......))))))).............----- ( -33.90) >DroPer_CAF1 10722 114 - 1 -GGGCUCGUCCGGGAUUUGAACCCGGGACCUCCCGCACCCUAAGCGGAAAUCAUACCCCUAGACCAACGAGCCGGUUAACGUUGGACCGUCCAAAAGCCUAUUUC--CGUUACCAGC- -.((((((((((((.......)))))......((((.......))))...................)))))))(((.((((((((.....))))...........--)))))))...- ( -35.60) >consensus _GGGCUCGUCCGGGAUUUGAACCCGGGACCUCCCGCACCCUAAGCGGAAAUCAUACCCCUAGACCAACGAGCCAGUUGACGUUCGACCGUCAAAAAGCCUAUUUA__UAUUAC_____ ..((((((((((((.......)))))......((((.......))))...................)))))))............................................. (-26.68 = -26.85 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:16 2006