Locus 5148

Sequence ID 2L_DroMel_CAF1
Location 14,599,635 – 14,599,745
Length 110
Max. P 0.546078
window8201

overview

Window 1

Location 14,599,635 – 14,599,745
Length 110
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 80.97
Mean single sequence MFE -35.61
Consensus MFE -26.68
Energy contribution -26.85
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.17
Structure conservation index 0.75
SVM decision value 0.02
SVM RNA-class probability 0.546078
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14599635 110 - 22407834
-GGGCUCGUCCGGGAUUUGAACCCGGGACCUCCCGCACCCUAAGCGGAAAUCAUACCCCUAGACCAACGAGCCAGUUGUCUUACGUUGGUCAAAAAGCUUACUCA--UAUCAC-----
-(((....((((((.......))))))....)))......(((((((........))....((((((((((.(....).))..)))))))).....)))))....--......----- ( -32.40)
>DroPse_CAF1 10805 114 - 1
-GGGCUCGUCCGGGAUUUGAACCCGGGACCUCCCGCACCCUAAGCGGAAAUCAUACCCCUAGACCAACGAGCCGGUUAACGUUCAGCCGUCCAAAAGCCUAUUUC--CGUUACCAGC-
-.((((((((((((.......)))))......((((.......))))...................)))))))(((.((((.......((......)).......--)))))))...- ( -32.74)
>DroWil_CAF1 158466 116 - 1
GGGGCUCGUCGGGGAUUUGAACCCGGGACCUCCCGCACCCUAAGCGGAAAUCAUACCCCUAGACCAACGAGCCAGUUGAUGUUGGCCUGGCAGGGUGUUCAUUUG--GCUCAUAGCCA
..((((.(((((((...(((..(((((....)))((.......))))...)))..))))..)))....(((((((.(((.....((((....))))..))).)))--))))..)))). ( -41.90)
>DroYak_CAF1 8224 110 - 1
-GGGCUCGUCCGGGAUUUGAACCCGGGACCUCCCGCACCCUAAGCGGAAAUCAUACCCCUAGACCAACGAGCCAGUUGCCCGAUGACGGUCAAAAUGCCUAGUCA--UCUUUC-----
-.((((((((((((.......)))))......((((.......))))...................)))))))........(((((((((......)))..))))--))....----- ( -37.10)
>DroMoj_CAF1 4438 112 - 1
-GGGCUCGUCCGGGAUUUGAACCCGGGACCUCCCGCACCCUAAGCGGAAAUCAUACCCCUAGACCAACGAGCCAGUUGAAGCGAUCUCGCCAAAGACGCUAUUUGAGUAUGAC-----
-.((((((((((((.......)))))......((((.......))))...................)))))))......((((.(((......))))))).............----- ( -33.90)
>DroPer_CAF1 10722 114 - 1
-GGGCUCGUCCGGGAUUUGAACCCGGGACCUCCCGCACCCUAAGCGGAAAUCAUACCCCUAGACCAACGAGCCGGUUAACGUUGGACCGUCCAAAAGCCUAUUUC--CGUUACCAGC-
-.((((((((((((.......)))))......((((.......))))...................)))))))(((.((((((((.....))))...........--)))))))...- ( -35.60)
>consensus
_GGGCUCGUCCGGGAUUUGAACCCGGGACCUCCCGCACCCUAAGCGGAAAUCAUACCCCUAGACCAACGAGCCAGUUGACGUUCGACCGUCAAAAAGCCUAUUUA__UAUUAC_____
..((((((((((((.......)))))......((((.......))))...................)))))))............................................. (-26.68 = -26.85 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:16 2006