Locus 5146

Sequence ID 2L_DroMel_CAF1
Location 14,596,521 – 14,596,618
Length 97
Max. P 0.778577
window8198

overview

Window 8

Location 14,596,521 – 14,596,618
Length 97
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 76.21
Mean single sequence MFE -28.31
Consensus MFE -17.41
Energy contribution -17.97
Covariance contribution 0.56
Combinations/Pair 1.06
Mean z-score -1.55
Structure conservation index 0.62
SVM decision value 0.55
SVM RNA-class probability 0.778577
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14596521 97 - 22407834
C----ACAGGGCAGGGGGAUU-GCUUC-CCCGUCCCAGAUAUCUUCAGCUCCAGCUCCAA------CUCCAACUCUGACUUCAUUGAGGCAUAACGUCUGCCUCGGAUU
.----...(((.(.(((((..-...))-))).))))..........(((....)))....------.(((.....((....))..((((((.......))))))))).. ( -28.90)
>DroPse_CAF1 7951 89 - 1
CGGGAACAGGGAACAGGGAAUCGGGAGCCGGGAGCCGGGAAC--------CGGGCUCUGA------------CUUCAACUUCAUUGAGGCAUAACGUUCGCCUCGGAUU
((((....(....).(.(((.((..((((.((((((.(....--------).))))))..------------..((((.....))))))).)..))))).))))).... ( -27.30)
>DroSec_CAF1 4962 103 - 1
C----ACAGGGCAGGGGGAUC-GCUUC-CCCGUCCCAGAUAUCUUUAGCUCCAGCUCCAACUUCAACUCCAACUCUGACUUCAUUGAGGCAUAACGUCUGCCUCGGAUU
.----...(((.(.(((((..-...))-))).)))).((.......(((....)))......))...(((.....((....))..((((((.......))))))))).. ( -29.32)
>DroSim_CAF1 4990 103 - 1
C----ACAGGGCAGGGGGAUU-GCUUC-CCCGUCCCAGAUAUCUUCAGCUCCAGCUCCAACUUCAACUCCAACUCUGACUUCAUUGAGGCAUAACGUCUGCCUCGGAUU
.----...(((.(.(((((..-...))-))).)))).((.......(((....)))......))...(((.....((....))..((((((.......))))))))).. ( -29.32)
>DroEre_CAF1 1935 103 - 1
C----ACAGGGCAGGGGGAUU-GGCUC-CCCGUCCCAGAUAUCUACAACUCCAACUCCAACUCCAACUCCAACUCUGACUUCAUUGAGGCAUAACGUCUGCCUCGGAUU
.----...(((.(.(((((..-...))-))).))))...............................(((.....((....))..((((((.......))))))))).. ( -26.60)
>DroYak_CAF1 5551 85 - 1
C----ACAGGGCAGGGGGAUU-GCUUC-CCCGUCCCAGAUAUCUGCAACU------------------UCAACUCUGACUUCAUUGAGGCAUAACGUCUGCCUCGGAUU
.----.(((((...(((((..-...))-)))((..(((....)))..)).------------------....)))))......((((((((.......))))))))... ( -28.40)
>consensus
C____ACAGGGCAGGGGGAUU_GCUUC_CCCGUCCCAGAUAUCUUCAGCUCCAGCUCCAA______CUCCAACUCUGACUUCAUUGAGGCAUAACGUCUGCCUCGGAUU
........(((..(((.((......)).)))..)))...............................................((((((((.......))))))))... (-17.41 = -17.97 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:13 2006