Locus 5145

Sequence ID 2L_DroMel_CAF1
Location 14,595,271 – 14,595,363
Length 92
Max. P 0.795959
window8197

overview

Window 7

Location 14,595,271 – 14,595,363
Length 92
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 94.44
Mean single sequence MFE -18.22
Consensus MFE -14.28
Energy contribution -14.32
Covariance contribution 0.04
Combinations/Pair 1.08
Mean z-score -1.92
Structure conservation index 0.78
SVM decision value 0.60
SVM RNA-class probability 0.795959
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14595271 92 + 22407834
GGCU----GGCUGGCAAUCCUCCAGCUUUAGAUGCAACUCCCAUUCCCAAUCCACUGGCACAGCCUCUGCCAUUUCCAUUUCCAUUCCCAAUUCGA
(((.----(((((((.........((.......))............((......)))).)))))...)))......................... ( -18.20)
>DroSec_CAF1 3793 92 + 1
GGCU----GGCUGGCAAUCCUCCAGCUUUAGAUGCAACUCCCAUUCCCAAUCCACUGGCACAGCCUCUGCCAUUUCCAUUUCCAUUCCCAAUUCGA
(((.----(((((((.........((.......))............((......)))).)))))...)))......................... ( -18.20)
>DroSim_CAF1 3818 92 + 1
GGCU----GGCUGGCAAUCCUCCAGCUUUAGAUGCAACUCCCAUUCCCAAUCCACUGGCACAGCCUCUGCCAUUUCCAUUUCCAUUCCCAAUUCGA
(((.----(((((((.........((.......))............((......)))).)))))...)))......................... ( -18.20)
>DroEre_CAF1 704 92 + 1
GGUG----GGCUGGCAAUCCUCCAGCUUUAGAUGCAACUCCGAUUCCCAAUCCACUGGCACAGCAUCUGCCAUUUCCAUUUCCAUUCCCAAUUCGA
((((----(..(((.((((.....((.......))......)))).)))..)))))((((.......))))......................... ( -20.60)
>DroYak_CAF1 4211 96 + 1
GGCUGACUGGCUGGCAAUCCUCCAGCUUUAGAUGCAACUCCCAUUCUCAAUCUACUGGCAUAGCCUUUACCAUUUCCAUUUCCAUUCCCAAUUCGA
(((((...((((((.......)))))).(((((................)))))......)))))............................... ( -15.89)
>consensus
GGCU____GGCUGGCAAUCCUCCAGCUUUAGAUGCAACUCCCAUUCCCAAUCCACUGGCACAGCCUCUGCCAUUUCCAUUUCCAUUCCCAAUUCGA
.((.....((((((.......))))))......))....................(((((.......)))))........................ (-14.28 = -14.32 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:12 2006