| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,593,637 – 14,593,747 |
| Length | 110 |
| Max. P | 0.950831 |
| Location | 14,593,637 – 14,593,747 |
|---|---|
| Length | 110 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 73.35 |
| Mean single sequence MFE | -36.43 |
| Consensus MFE | -16.51 |
| Energy contribution | -16.80 |
| Covariance contribution | 0.29 |
| Combinations/Pair | 1.32 |
| Mean z-score | -3.24 |
| Structure conservation index | 0.45 |
| SVM decision value | 1.41 |
| SVM RNA-class probability | 0.950831 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14593637 110 + 22407834 UGCUUUUCGGCU---------GUUUGGUCAGUCGCCUGACAGGCGAAGCCUA-AAAUUCAAUUAAAAAUAUUAAGGCUGAACCUGGGCUACUACUGCUUAUUAGACUUUUCGGCCGAACA .....(((((((---------(...((((..(((((.....)))))((((((-...((((.((((.....))))...))))..))))))..............))))...)))))))).. ( -35.80) >DroEre_CAF1 120574 103 + 1 UGCUUUUCGGCC---------GCUCGCUCAGGCG---GUCA-----GGCCUAAAAAUUCAAUUAAAAAUAUUAAGGCUGAGCCUGGGCUACUACUGCUUAUUAGACUUUUCGGCCGAACA .....(((((((---------(...((((((((.---....-----(((((.((.(((........))).)).)))))..))))))))..(((........)))......)))))))).. ( -36.00) >DroAna_CAF1 61013 115 + 1 CGCUGUUCGAUUUUUAGGUUUUUUUGGCCACUUGCC-GGCAGGCACAGGCCA-AAAUUCAAUUAAAAAUAUUAAGGUUGAGCCUGUGCU---ACUGCUUAUUAGGCUUUUGGGCUGAACU ....((((.((((((((....((((((((...((((-....))))..)))))-))).....)))))))).....(((((((((((.((.---...))....)))))))...)))))))). ( -37.50) >consensus UGCUUUUCGGCU_________GUUUGGUCAGUCGCC_GACAGGC__AGCCUA_AAAUUCAAUUAAAAAUAUUAAGGCUGAGCCUGGGCUACUACUGCUUAUUAGACUUUUCGGCCGAACA .....(((((((.........((((((((...((((.....))))................((((.....)))))))))))).(((((.......)))))...........))))))).. (-16.51 = -16.80 + 0.29)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:11 2006