Locus 5143

Sequence ID 2L_DroMel_CAF1
Location 14,591,671 – 14,591,785
Length 114
Max. P 0.938415
window8194 window8195

overview

Window 4

Location 14,591,671 – 14,591,785
Length 114
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 92.37
Mean single sequence MFE -34.20
Consensus MFE -29.47
Energy contribution -30.03
Covariance contribution 0.56
Combinations/Pair 1.06
Mean z-score -2.96
Structure conservation index 0.86
SVM decision value 1.27
SVM RNA-class probability 0.938415
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14591671 114 + 22407834
CAUAUCUUCUAAUAGAUCGCCAACUUGGCAUACUUAACUUACG------UUCGCAGUUAGUGUUUUCCUUAACUCUUUCUGGCCAGUUGACCGUGCUAAGUUGGGCCAUAAAUCGGCAGU
...((((......))))..((((((((((((..((((((...(------(...(((..((.(((......))).))..))))).))))))..))))))))))))(((.......)))... ( -33.00)
>DroEre_CAF1 118533 119 + 1
CAUAUCUUCUAAUAGAUCGCCAGCUUGGCAUACUUAACUUACGUGUACGUACCCAGUUAGUGUU-UCCUUAACUCUUUCUGGCCAGUUCGCCGUGCUAAGUUGGGCCAUAAAUCGGCAGU
...((((......))))..((((((((((((....((((((((....)))).((((..((.(((-.....))).))..))))..))))....))))))))))))(((.......)))... ( -35.60)
>DroAna_CAF1 59443 114 + 1
CAUAUCUUCUAAUAGAUCGCCAACUUGGCAUACUUAACUUACG------UCCCGAGUUAGUGUUUUCCUUAACUCUUUCUGGCCAGUUGACCGUGCUAAGUUGGGCCAUAAAUCGGCAGU
...((((......))))..((((((((((((..((((((...(------((..(((((((.(....).))))))).....))).))))))..))))))))))))(((.......)))... ( -34.00)
>consensus
CAUAUCUUCUAAUAGAUCGCCAACUUGGCAUACUUAACUUACG______UACCCAGUUAGUGUUUUCCUUAACUCUUUCUGGCCAGUUGACCGUGCUAAGUUGGGCCAUAAAUCGGCAGU
...((((......))))..((((((((((((..((((((.............((((..((.(((......))).))..))))..))))))..))))))))))))(((.......)))... (-29.47 = -30.03 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 5

Location 14,591,671 – 14,591,785
Length 114
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 92.37
Mean single sequence MFE -31.87
Consensus MFE -28.45
Energy contribution -28.57
Covariance contribution 0.11
Combinations/Pair 1.03
Mean z-score -1.74
Structure conservation index 0.89
SVM decision value 0.11
SVM RNA-class probability 0.588666
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14591671 114 - 22407834
ACUGCCGAUUUAUGGCCCAACUUAGCACGGUCAACUGGCCAGAAAGAGUUAAGGAAAACACUAACUGCGAA------CGUAAGUUAAGUAUGCCAAGUUGGCGAUCUAUUAGAAGAUAUG
..((((((((..((((...(((((((..((((....))))......(((((.(.......)))))).....------.....)))))))..))))))))))))((((......))))... ( -30.80)
>DroEre_CAF1 118533 119 - 1
ACUGCCGAUUUAUGGCCCAACUUAGCACGGCGAACUGGCCAGAAAGAGUUAAGGA-AACACUAACUGGGUACGUACACGUAAGUUAAGUAUGCCAAGCUGGCGAUCUAUUAGAAGAUAUG
..(((((.....((((...(((((((..(((......)))......(((((.(..-..)..)))))...((((....)))).)))))))..))))...)))))((((......))))... ( -30.30)
>DroAna_CAF1 59443 114 - 1
ACUGCCGAUUUAUGGCCCAACUUAGCACGGUCAACUGGCCAGAAAGAGUUAAGGAAAACACUAACUCGGGA------CGUAAGUUAAGUAUGCCAAGUUGGCGAUCUAUUAGAAGAUAUG
..((((((((..((((...(((((((..((((....)))).....((((((.(.......)))))))....------.....)))))))..))))))))))))((((......))))... ( -34.50)
>consensus
ACUGCCGAUUUAUGGCCCAACUUAGCACGGUCAACUGGCCAGAAAGAGUUAAGGAAAACACUAACUGGGAA______CGUAAGUUAAGUAUGCCAAGUUGGCGAUCUAUUAGAAGAUAUG
..((((((((..((((...(((((((..(((......)))......(((((.(.......))))))................)))))))..))))))))))))((((......))))... (-28.45 = -28.57 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:10 2006