Locus 5142

Sequence ID 2L_DroMel_CAF1
Location 14,590,504 – 14,590,602
Length 98
Max. P 0.820489
window8193

overview

Window 3

Location 14,590,504 – 14,590,602
Length 98
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.96
Mean single sequence MFE -32.90
Consensus MFE -16.27
Energy contribution -16.30
Covariance contribution 0.03
Combinations/Pair 1.26
Mean z-score -2.84
Structure conservation index 0.49
SVM decision value 0.68
SVM RNA-class probability 0.820489
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14590504 98 - 22407834
AUAGUGAUUUAUUUGCAUCGAUUGGCGCGGGG----------------------CUGGCGGAUCCGAGCAUCGGGCAGAUGAUCCAGCCGCGGUAAAUAGAUGGCUAGAAAAUAUCAAUA
.((((.((((((((((..((.....))((.((----------------------((((((....))..((((.....))))..)))))).)))))))))))).))))............. ( -33.50)
>DroSec_CAF1 132757 97 - 1
AUAGUGAUUUAUUUGCAUCGAUUGGCGCGGGG----------------------CUGGCGGAU-CGAGCAUCGGGCAGAUGAUCCAGUCGCGGUAAAUAGAUGGCUAGAAAAUAUCAAUA
.((((.((((((((((..(((((((..((...----------------------(((.(.(((-.....))).).))).))..)))))))..)))))))))).))))............. ( -33.60)
>DroSim_CAF1 111053 97 - 1
AUAGUGAUUUAUUUGCAUCGAUUGGCGCGGGG----------------------CUGGCGGAU-CGAGCAUCGGGCAGAUGAUCCAGUCGCGGUAAAUAGAUGGCUAGAAAAUAUCAAUA
.((((.((((((((((..(((((((..((...----------------------(((.(.(((-.....))).).))).))..)))))))..)))))))))).))))............. ( -33.60)
>DroEre_CAF1 117389 88 - 1
AUAGUGAUUUAUUUGCAUCGAUUGGCG-------------------------------GGCGC-GGGGCAUCGGGCAGAUGAUCCAGCCGCGGUAAAUAGAUGGCUAGAAAAUAUCAAUA
.((((.((((((((((..((.....))-------------------------------(((..-((..((((.....))))..)).)))...)))))))))).))))............. ( -28.40)
>DroYak_CAF1 116451 119 - 1
AUAGUGAUUUAUUUGCAUCGAUCGGCGCGGAGGAUCCAGCAUCGCCUAUCGAGCAUGGAGCAU-GGAGCAUGGGGCAGAUGAUCCAGCCGCGGUAAAUAGAUGGCUAGAAAAUAUCAAUA
.((((.((((((((((.((....))(((((.(((((....(((((((.((.(((.....)).)-.)).....)))).))))))))..))))))))))))))).))))............. ( -37.60)
>DroAna_CAF1 58257 91 - 1
AUAGUGAUUUAUUUGCAUCGAUUGAAGCGGGG----------------------CUCGGGUGC-C------GGGGCAGAUGAUGAAGUCGCGGCAAAUAGAUGGCUAGAAAAUAUCAAUA
.((((.((((((((((..(((((....((..(----------------------(((.(....-)------.))))...))....)))))..)))))))))).))))............. ( -30.70)
>consensus
AUAGUGAUUUAUUUGCAUCGAUUGGCGCGGGG______________________CUGGCGGAU_CGAGCAUCGGGCAGAUGAUCCAGCCGCGGUAAAUAGAUGGCUAGAAAAUAUCAAUA
.((((.((((((((((..((..((((..................................(((......)))((((....).))).)))))))))))))))).))))............. (-16.27 = -16.30 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:08 2006