Locus 5140

Sequence ID 2L_DroMel_CAF1
Location 14,588,364 – 14,588,480
Length 116
Max. P 0.945431
window8190

overview

Window 0

Location 14,588,364 – 14,588,480
Length 116
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 76.98
Mean single sequence MFE -25.97
Consensus MFE -15.45
Energy contribution -16.77
Covariance contribution 1.31
Combinations/Pair 1.16
Mean z-score -2.23
Structure conservation index 0.59
SVM decision value 1.35
SVM RNA-class probability 0.945431
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14588364 116 - 22407834
UAAGAGCCUAUGAUGAAUAUUGGUAAUUCUCCAAUGCAGUAAUACCAGGAAAAACAAUAUUCUUGAUUAUUGCGAUUCUUUGGAAAUAUUUAU---GUU-CUUCCACCGAGUUACAAUAU
................((((((.((((((.....(((((((((..((((((........)))))))))))))))......(((((..((....---)).-.)))))..)))))))))))) ( -24.20)
>DroSec_CAF1 130033 116 - 1
UAAAAGCUCAUGAUGAAUAUAGGUAAUUCUCCAAUGCAGUAAUACCAGGAAAAAAAAUAUUCUUGAUUACUGCGAUUCUUUGGAAAUAUUUAU---GUU-CUUCCACCGAGUUACAAUAU
....(((((..((.(((((((((((....((((((((((((((..((((((........))))))))))))))).....)))))..)))))))---)))-).))....)))))....... ( -31.60)
>DroSim_CAF1 107821 116 - 1
UAAAAGCCCAUGAUGAAUAUAGGUAAUUCUCAAAUGCAGUAAUACCAGGAAAAACAAUAUUCUUGAUUAUUGCGAUUCAUUGGAAAUAUUUAU---GUU-CUUCCACCGAGUUACAAUAU
...........((.(((((((((((.(((.(((.(((((((((..((((((........))))))))))))))).....)))))).)))))))---)))-).))................ ( -24.40)
>DroEre_CAF1 113695 107 - 1
UAAGC--------GGCAAAUGUGUAACUGUCUAA-----UAGUUCAAGGGAAUGCGGUGUUCUUGAUUACAGCAUUUCUUGGGAAGCAUUGAUUAUGUUUUUUCCACAGAGGAACAAGAU
.....--------((((..........))))...-----..((((.(((((((((.(((........))).)))))))))(((((((((.....))))..)))))......))))..... ( -23.70)
>consensus
UAAAAGCCCAUGAUGAAUAUAGGUAAUUCUCCAAUGCAGUAAUACCAGGAAAAACAAUAUUCUUGAUUACUGCGAUUCUUUGGAAAUAUUUAU___GUU_CUUCCACCGAGUUACAAUAU
......................(((((((......((((((((..((((((........))))))))))))))........((((................))))...)))))))..... (-15.45 = -16.77 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:05 2006