Locus 5139

Sequence ID 2L_DroMel_CAF1
Location 14,587,410 – 14,587,509
Length 99
Max. P 0.994572
window8189

overview

Window 9

Location 14,587,410 – 14,587,509
Length 99
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 99.60
Mean single sequence MFE -25.54
Consensus MFE -25.00
Energy contribution -25.20
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -2.09
Structure conservation index 0.98
SVM decision value 2.49
SVM RNA-class probability 0.994572
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14587410 99 - 22407834
CCGCGCGUGUAGAACAUCAUCUGGCACCGCGAGCUGACAUGCAAAUUAAAAAGCAUAUGCUUUGACUCCUAAUCACAAAGCACUUUCAUUCAGUGACUG
.((((.(((((((......))).)))))))).(((((.((((..........)))).(((((((...........))))))).......)))))..... ( -26.10)
>DroSec_CAF1 129121 99 - 1
CCGCGCGUGUAGAACAUCAUCUGGCACCGCGAGCUGACAUGCAAAUUAAAAAGCAUAUGCUUUGACUCCUAAUCACAAAGCACUUUCAUUCAGUGACUG
.((((.(((((((......))).)))))))).(((((.((((..........)))).(((((((...........))))))).......)))))..... ( -26.10)
>DroSim_CAF1 106888 99 - 1
CCGCGCGUGUAGAACAUCAUCUGGCACCGCGAGCUGACAUGCAAAUUAAAAAGCAUAUGCUUUGACUCCUAAUCACAAAGCACUUUCAUUCAGUGACUG
.((((.(((((((......))).)))))))).(((((.((((..........)))).(((((((...........))))))).......)))))..... ( -26.10)
>DroEre_CAF1 112771 99 - 1
CCGCGCGUGUAAAACAUCAUCUGGCACCGCGAGCUGACAUGCAAAUUAAAAAGCAUAUGCUUUGACUCCUAAUCACAAAGCACUUUCAUUCAGUGACUG
.((((.((((.............)))))))).(((((.((((..........)))).(((((((...........))))))).......)))))..... ( -23.32)
>DroYak_CAF1 111348 99 - 1
CCGCGCGUGUAGAACAUCAUCUGGCACCGCGAGCUGACAUGCAAAUUAAAAAGCAUAUGCUUUGACUCCUAAUCACAAAGCACUUUCAUUCAGUGACUG
.((((.(((((((......))).)))))))).(((((.((((..........)))).(((((((...........))))))).......)))))..... ( -26.10)
>consensus
CCGCGCGUGUAGAACAUCAUCUGGCACCGCGAGCUGACAUGCAAAUUAAAAAGCAUAUGCUUUGACUCCUAAUCACAAAGCACUUUCAUUCAGUGACUG
.((((.(((((((......))).)))))))).(((((.((((..........)))).(((((((...........))))))).......)))))..... (-25.00 = -25.20 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:04 2006