Locus 5137

Sequence ID 2L_DroMel_CAF1
Location 14,584,452 – 14,584,570
Length 118
Max. P 0.792789
window8180

overview

Window 0

Location 14,584,452 – 14,584,570
Length 118
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 78.29
Mean single sequence MFE -25.25
Consensus MFE -14.00
Energy contribution -16.38
Covariance contribution 2.38
Combinations/Pair 1.25
Mean z-score -2.17
Structure conservation index 0.55
SVM decision value 0.59
SVM RNA-class probability 0.792789
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14584452 118 + 22407834
UACUUUUGAAAUACUUUACAUUGCGGUUGAAUAAUAUAAUAUAGCUUCGUUUUAUAUAGAAGACAGUAAUCAUUAUAUUUUUUAUUGCAAAGCAGAGUGAUAUCGCUUCC--ACAAAGGA
..((((((............(((((((.(((.((((((((((.(((..(((((......)))))))).)).)))))))).))))))))))....(((((....)))))..--.)))))). ( -23.20)
>DroSec_CAF1 126141 114 + 1
UACUUUUGAAAUACCUUAUAUUGCGGUUGAAUAAUAUAAAAUAGCUU----UUAUAUUGAAGACAGUAAUCGCUAUAUUUUUAAUCGCAAAGCAGAGUGAUAUCGCUUCC--ACAAAAGA
..((((((............(((((((((((((((((((((....))----)))))))).....(((....))).....)))))))))))....(((((....)))))..--.)))))). ( -25.80)
>DroSim_CAF1 103904 118 + 1
UACUUUUGAAAUACUUUAUAUUGCGGUUGAAUAUUAUAAAAUAGCUUCGUUCUAUAUUGAAGACAGUAAUCAUUAUAUUUUUAAUCGCAAAGCAGAGUGAUAUCGCUUCC--ACAAAAGA
..((((((............(((((((((((...(((((.((.(((((.(((......))))).))).))..)))))..)))))))))))....(((((....)))))..--.)))))). ( -26.00)
>DroYak_CAF1 108124 112 + 1
------UAAAAUUCUUUUUAUUGCGGUUGGA-AAAAUAAAGUGCAUUUGUUUUCUAUGGAAGAAAGCAAUCUUU-GAAUUGCAAUCGCAAAGCAGGGUGAUAUUGCUUAGACAUCAUUAA
------...............((((((((.(-(...(((((.....(((((((((.....))))))))).))))-)..)).))))))))((((((.......))))))............ ( -26.00)
>consensus
UACUUUUGAAAUACUUUAUAUUGCGGUUGAAUAAUAUAAAAUAGCUUCGUUUUAUAUUGAAGACAGUAAUCAUUAUAUUUUUAAUCGCAAAGCAGAGUGAUAUCGCUUCC__ACAAAAGA
..((((((............(((((((((((.((((((((((..((((..........))))...))....)))))))))))))))))))....(((((....))))).....)))))). (-14.00 = -16.38 +   2.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:56 2006