| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,581,886 – 14,581,990 |
| Length | 104 |
| Max. P | 0.984699 |
| Location | 14,581,886 – 14,581,990 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.39 |
| Mean single sequence MFE | -34.18 |
| Consensus MFE | -13.69 |
| Energy contribution | -15.42 |
| Covariance contribution | 1.73 |
| Combinations/Pair | 1.32 |
| Mean z-score | -3.60 |
| Structure conservation index | 0.40 |
| SVM decision value | 1.98 |
| SVM RNA-class probability | 0.984699 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14581886 104 + 22407834 AAAAUGGAGCAAUUUCUUUGGCAUCUCCAAAGUGCUGGGUACCCA---------GGGGCGG----GGAGAAAGCACUUGG-GAGAAUGGUAAGGAGGGGCAAAGCAG--AAAUAUAUAAA ........((...(((((((.(((((((.(((((((.....(((.---------.....))----).....))))))).)-))).))).)))))))..)).......--........... ( -35.00) >DroSec_CAF1 123546 103 + 1 AAAAUGGAGCAAUUUCUUUGGCAUCUCCAAAGUGCUGGGGACCCA---------GGGGCAG----GGGGAAAGCACUUGG-GAGAAUGGUAAGGAGGAGCA-GGCAG--AAAUAUAUAAA ........((..((((((((.(((((((.(((((((.....(((.---------......)----))....))))))).)-))).))).)))))))).)).-.....--........... ( -33.30) >DroSim_CAF1 100821 103 + 1 AAAAUGGAGCAAUUUCUUUGGCAUCUCCAAAGUGCUGGGAACUCA---------GGGGCAG----GGGGAAAGCACUUGG-GAGAAUGGUAAGGAGGAGCA-GGCAG--AAAUAUAUAAA ........((..((((((((.(((((((.(((((((.....(((.---------......)----))....))))))).)-))).))).)))))))).)).-.....--........... ( -30.30) >DroEre_CAF1 107483 116 + 1 AAAAUGGAGCAAUUUCUUUGGCAUCUGCAAAGUACUGUGGAGCCAUGGGGCCAUGGGGCGGGGCGGGGGAAAGCACUUUG-GAGAGUGGUAAGG-GGGGCUGGGCAG--AAAUAUAUAAA ........((..(..(((((.(((((.((((((.((((....(((((....))))).)))).((........))))))))-.))).)).)))))-..).....))..--........... ( -32.60) >DroYak_CAF1 105663 104 + 1 AAAAUGGAGCAAUUUCUUUGGCAUCUCCAAAGUGCUGCGGCCCCA---------GGGGCGG----GGGGAAGGCACUUGG-GGGAAGGGAAAGGAGGGGCUGGGCGG--AAAUAUAUAAA .......(((..(((((((..(.(((((.(((((((....((((.---------.......----))))..))))))).)-)))).)..)))))))..)))......--........... ( -36.60) >DroAna_CAF1 51434 101 + 1 AAAAUGGAGCAAUUCCUUUGGCAACUGCAAAGCGCAAGCAAUACG---------GGCACGG----AGGGAAGAUGCUCCGUGUGCCU-----GG-GGGGCCGGGAGGCUAUAUAUAUAAA ..............(((..(((..(((....((....))....))---------)((((((----((........))))))))))).-----.)-))((((....))))........... ( -37.30) >consensus AAAAUGGAGCAAUUUCUUUGGCAUCUCCAAAGUGCUGGGGACCCA_________GGGGCGG____GGGGAAAGCACUUGG_GAGAAUGGUAAGGAGGGGCAGGGCAG__AAAUAUAUAAA ........((..((((((.....((((..(((((((.....(((.....................)))...)))))))...)))).....))))))..)).................... (-13.69 = -15.42 + 1.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:53 2006