Locus 5134

Sequence ID 2L_DroMel_CAF1
Location 14,581,393 – 14,581,484
Length 91
Max. P 0.593445
window8176

overview

Window 6

Location 14,581,393 – 14,581,484
Length 91
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 75.25
Mean single sequence MFE -23.37
Consensus MFE -4.19
Energy contribution -4.58
Covariance contribution 0.39
Combinations/Pair 1.29
Mean z-score -2.88
Structure conservation index 0.18
SVM decision value 0.12
SVM RNA-class probability 0.593445
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14581393 91 - 22407834
CAUAGUUUGGGUUA----UUUAAUUGACUCUCUUU--GCCUGUUUAUAAAACUUACAAAUUACUUUAUAAUGGGGAAUC---CCGGCAAAAGCCAGACAC
....((((((((((----......))))....(((--(((...(((((((.............))))))).(((....)---))))))))..)))))).. ( -21.92)
>DroSec_CAF1 123053 91 - 1
CAUAGUUUGGGUUA----UUUAAUUGACUCUUUUU--GCCAGUAUAUAAAACUUACAAAUUACUCCAUAAUGGGGAACC---CCGGCAAAAGCCAGACAC
....((((((((((----......))))..(((((--(((.(((.........)))...............(((....)---)))))))))))))))).. ( -25.00)
>DroSim_CAF1 100328 91 - 1
CAUAGUUUGGGUUA----UUUAAUUGACUCUUUUU--GCCAGUAUAUAAAACUUACAAAUUACUCCAUAAUGGGGAACC---CCGGCAAAAGCCAGACAC
....((((((((((----......))))..(((((--(((.(((.........)))...............(((....)---)))))))))))))))).. ( -25.00)
>DroEre_CAF1 106985 90 - 1
CAUAGUUUGGGUUC-----UUAAUUGACUGCUCUU--GCCUGUUUAUAAAACUUACAAAUUGCUCUAUAAUGGGUAACC---ACGGCAAAAGCCAGACAC
....(((((((((.-----......))))(((.((--(((.(((.....))).......((((((......))))))..---..))))).)))))))).. ( -20.50)
>DroYak_CAF1 105167 98 - 1
CAUAGUUUGAGCUAUUUAUUUAAUUGACUGCUCUU--GGCUGUUAAUAAAACUUACAAAUUACUCCGUAAUGGGGAACCCCAAUGGCAAAAGCCAGACAC
....(((((.(((.........((((((.((....--.)).)))))).................((((..((((....))))))))....)))))))).. ( -24.00)
>DroAna_CAF1 50908 73 - 1
CAGA----GGCUUA----UUUAAUUGACUGUUUUCCAACCAGUU---AGG--UCUCUGGUU----GCCAGUGGUGAACC--------ACAAGCCC--CAC
..(.----(((((.----.................(((((((..---...--...))))))----)...((((....))--------))))))).--).. ( -23.80)
>consensus
CAUAGUUUGGGUUA____UUUAAUUGACUCUUUUU__GCCAGUUUAUAAAACUUACAAAUUACUCCAUAAUGGGGAACC___CCGGCAAAAGCCAGACAC
....((((((.((.............................................((((.....))))((....))..........)).)))))).. ( -4.19 =  -4.58 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:52 2006