Locus 5133

Sequence ID 2L_DroMel_CAF1
Location 14,573,480 – 14,573,572
Length 92
Max. P 0.507164
window8175

overview

Window 5

Location 14,573,480 – 14,573,572
Length 92
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 80.13
Mean single sequence MFE -29.70
Consensus MFE -15.75
Energy contribution -15.97
Covariance contribution 0.22
Combinations/Pair 1.12
Mean z-score -1.93
Structure conservation index 0.53
SVM decision value -0.05
SVM RNA-class probability 0.507164
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14573480 92 + 22407834
GACAGGGUAUAAAA----UUCCCCAAUCCAU-------GGCCAGCCAAACUCAACCCGAACGCC---------------ACUCGAGUUCAACUCAUUUGGCAGCAGCUGCCAUGGGGC
....(((.(.....----.).)))..(((((-------(((.(((.....((.....))..(((---------------(...(((.....)))...))))....))))))))))).. ( -28.30)
>DroSec_CAF1 105092 92 + 1
GUCAGGGUAUAAAA----UUCCCCAAUCCAU-------GGCCAGCCAAACUCAACCCGAACGCC---------------ACUCGAGCUCAACUCAUUUGGCAGCAGCUGCCAUGGGGC
(((.(((.(.....----.).)))...((((-------(((.(((.....((.....))..(((---------------(...(((.....)))...))))....))))))))))))) ( -27.90)
>DroSim_CAF1 92548 92 + 1
GUCAGGGUAUUAAA----UUCCCCAAUCCAU-------GGUCAGCCAAACUCAACCCGAACGCC---------------ACUCGAGCUCAACUCAUUUGGCAGCAGCUGCCAUGGGGC
(((.(((.(.....----.).)))...((((-------((.((((.....((.....))..(((---------------(...(((.....)))...))))....))))))))))))) ( -27.90)
>DroEre_CAF1 99485 91 + 1
GCCAGGGUAUGAAA----CAGCCCAAACCAU-------GGCCAGCCA-ACUCAGCCCGAACUCC---------------ACUCGAGCUCAACUCAUUUGGCAGCAGCUGCCAUGGGGC
(((.((((......----..))))...((((-------(((.(((..-.((..(((.((.....---------------..))(((.....)))....)))))..))))))))))))) ( -31.00)
>DroYak_CAF1 97174 114 + 1
GCCAGGGUAUGCAA----CUCCCCAAUCCAUGGCCCAUGGCCAGCCAAACUCAACCCCAACUCCACUGCACUCCACUCCACUGGAGCUCAACUCAUUUGGCAGCAGCUGCCAUGGGGC
(((((((((((...----..........))).)))).)))).............(((((.......((..(((((......)))))..)).......((((((...))))))))))). ( -34.02)
>DroAna_CAF1 42806 95 + 1
GAAAGGGUAUGACAAAGGAUCCCCAAUUCAU-------GGCCGACGGGAUGCAGUCCGAACUCG---------------ACUCGGGCUCAACUCAUUUG-CUGCAGCUGCCAUGGGGC
....(((.((........)).)))..(((((-------(((....(((.((.(((((((.....---------------..))))))))).)))....(-(....)).)))))))).. ( -29.10)
>consensus
GACAGGGUAUGAAA____UUCCCCAAUCCAU_______GGCCAGCCAAACUCAACCCGAACGCC_______________ACUCGAGCUCAACUCAUUUGGCAGCAGCUGCCAUGGGGC
....(((..............)))..............((....))........(((..........................(((.....)))...((((((...)))))).))).. (-15.75 = -15.97 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:51 2006